Ahmed M. Amer
University of Texas MD Anderson Cancer Center
Network
Latest external collaboration on country level. Dive into details by clicking on the dots.
Publication
Featured researches published by Ahmed M. Amer.
Scientific Reports | 2018
Chad Tang; Brian P. Hobbs; Ahmed M. Amer; Xiao Li; Carmen Behrens; Jaime Rodriguez Canales; Edwin Roger Parra Cuentas; Pamela Villalobos; David V. Fried; Joe Y. Chang; David S. Hong; James W. Welsh; Boris Sepesi; L Court; Ignacio I. Wistuba; Eugene J. Koay
With increasing use of immunotherapy agents, pretreatment strategies for identifying responders and non-responders is useful for appropriate treatment assignment. We hypothesize that the local immune micro-environment of NSCLC is associated with patient outcomes and that these local immune features exhibit distinct radiologic characteristics discernible by quantitative imaging metrics. We assembled two cohorts of NSCLC patients treated with definitive surgical resection and extracted quantitative parameters from pretreatment CT imaging. The excised primary tumors were then quantified for percent tumor PDL1 expression and density of tumor-infiltrating lymphocyte (via CD3 count) utilizing immunohistochemistry and automated cell counting. Associating these pretreatment radiomics parameters with tumor immune parameters, we developed an immune pathology-informed model (IPIM) that separated patients into 4 clusters (designated A-D) utilizing 4 radiomics features. The IPIM designation was significantly associated with overall survival in both training (5 year OS: 61%, 41%, 50%, and 91%, for clusters A-D, respectively, P = 0.04) and validation (5 year OS: 55%, 72%, 75%, and 86%, for clusters A-D, respectively, P = 0.002) cohorts and immune pathology (all P < 0.05). Specifically, we identified a favorable outcome group characterized by low CT intensity and high heterogeneity that exhibited low PDL1 and high CD3 infiltration, suggestive of a favorable immune activated state. We have developed a NSCLC radiomics signature based on the immune micro-environment and patient outcomes. This manuscript demonstrates model creation and validation in independent cohorts.
Advances in radiation oncology | 2017
L.E. Colbert; Shalini Moningi; Awalpreet S. Chadha; Ahmed M. Amer; Yeonju Lee; Robert A. Wolff; Gauri R. Varadhachary; Jason B. Fleming; Matthew H. Katz; Prajnan Das; Sunil Krishnan; Eugene J. Koay; Peter J. Park; Christopher H. Crane; Cullen M. Taniguchi
Purpose To review acute and late toxicities after chemoradiation for locally advanced pancreatic ductal adenocarcinoma in patients who were treated with escalated dose radiation (EDR). Methods and materials Maximum Common Terminology Criteria for Adverse Events Version 4.0 acute toxicities (AT) during radiation and within 60 days after radiation were recorded for both acute gastrointestinal toxicity and overall toxicity (OT). Late toxicities were also recorded. EDR was generally delivered with daily image guidance and breath-hold techniques using intensity modulated radiation therapy (IMRT) planning. These were compared with patients who received standard dose radiation (SDR) delivered as 50.4 Gy in 28 fractions using 3-dimensional chemoradiation therapy planning. Results A total of 59 of 154 patients (39%) received EDR with biologically equivalent doses >70 Gy. The most frequent schedules were 63 Gy in 28 fractions (19 of 154 patients), 67.5 Gy in 15 fractions (10 of 154 patients), and 70 Gy in 28 fractions (15 of 154 patients). No grade 4 or grade 5 OT or late toxicities were reported. Rates of grade 3 acute gastrointestinal toxicity were significantly lower in patients who received EDR compared with SDR (1% vs 14%; P < .001). Similarly, rates of grade 3 OT were also lower for EDR compared with SDR (4% vs 16%; P = .004). The proportion of patients who experienced no AT was higher in the EDR group than the SDR group (36% vs 15%; P = .001). For EDR patients treated with IMRT, a lower risk of AT was associated with a later treatment year (P = .007), nonpancreatic head tumor location (P = .01), breath-hold (P = .002), 4-dimensional computed tomography (P = .003), computed tomography on rails (P = .002), and lower stomach V40 (P = .03). With a median time of 12 months (range, 1-79 months) from the start of radiation therapy to the last known follow-up in the EDR group, 51 of 59 patients (86%) had no late toxicity. Six of 59 EDR patients (10%) had either strictures or gastrointestinal bleeding that required intervention. No significant predictors of late toxicity were identified. Conclusion Overall acute and late toxicity rates were low with EDR using an IMRT technique with image guidance and respiratory gating.
Radiographics | 2016
Venkateswar R. Surabhi; Christine O. Menias; Ahmed M. Amer; Mohamed Elshikh; Venkata S. Katabathina; Amy K. Hara; William C. Baughman; Ania Z. Kielar; Khaled M. Elsayes; Cary Lynn Siegel
Tumors and tumorlike conditions of the anus and perianal region originate from the anal canal and anal margin or result from direct extension of tumors from adjacent organs. The anatomy of the anal canal is complex, and its different histologic characteristics can lead to diverse pathologic conditions. The anal canal extends from the anorectal junction to the anal verge. The World Health Organization classification of anal canal tumors includes (a) anal intraepithelial neoplasia, the precursor of squamous cell carcinoma (SCC), and (b) invasive tumors. Invasive tumors are further classified on the basis of cell type as epithelial tumors (SCC, adenocarcinoma, mucinous adenocarcinoma, small cell carcinoma, and undifferentiated carcinoma), nonepithelial tumors, carcinoid tumors, melanoma, and secondary tumors (direct spread from rectal, cervical, or prostate carcinoma). The anal margin, or perianal skin, lies outside the anal verge and encompasses a radius of 5 cm from the anal verge. Tumors in the anal margin are classified according to the World Health Organization classification of skin tumors. Anal margin tumors include SCC, anal intraepithelial neoplasia, also known as Bowen disease, adenocarcinoma and its precursor Paget disease, basal cell carcinoma, and verrucous carcinoma (Buschke-Löwenstein tumor), which is a rare variant of SCC. Imaging plays an important role in the evaluation, staging, and follow-up of patients with anal and perianal tumors. However, because of the overlap in imaging features among these diverse entities, a definitive diagnosis is best established at histopathologic examination. Nevertheless, familiarity with the pathogenesis, imaging features, and treatment of these tumors can aid radiologic diagnosis and guide appropriate patient treatment. (©)RSNA, 2016.
Cancer | 2018
Ahmed M. Amer; Mohamed Zaid; Baishali Chaudhury; Dalia Elganainy; Yeonju Lee; Christopher Wilke; Jordan M. Cloyd; Huamin Wang; Anirban Maitra; Robert A. Wolff; Gauri R. Varadhachary; Michael J. Overman; J. E. Lee; Jason B. Fleming; Ching Wei Tzeng; Matthew H. Katz; Emma B. Holliday; Sunil Krishnan; Bruce D. Minsky; Joseph M. Herman; Cullen M. Taniguchi; Prajnan Das; Christopher H. Crane; Ott Le; Priya Bhosale; Eric P. Tamm; Eugene J. Koay
The assessment of pancreatic ductal adenocarcinoma (PDAC) response to therapy remains challenging. The objective of this study was to investigate whether changes in the tumor/parenchyma interface are associated with response.
Current Problems in Diagnostic Radiology | 2017
Sean D. Raj; Ahmed M. Amer; Naveen Garg; Savitri Krishnamurthy; Kenneth R. Hess; Young Mi Park; Tanya Moseley; Gary J. Whitman
Suspicious regional lymph nodes may be incidentally identified on breast ultrasound examinations in patients who present for sonographic evaluation without a known or a suspected breast malignancy, and there is a paucity of data on whether biopsy should be performed. This study aims to characterize incidental sonographically detected suspicious regional lymph nodes and determine whether tissue sampling or follow-up imaging is required. A total of 40,773 consecutive breast ultrasounds were reviewed. Overall, 7 women with nonpalpable, incidental, suspicious axillary or supraclavicular lymph nodes in an otherwise unremarkable breast and without history of malignancy or systemic disease were identified. In all, 5 women with 6 nodes underwent ultrasound-guided fine needle aspiration and 2 women with 3 nodes were recommended follow-up ultrasound. Follow-up imaging, cytology, and all-cause clinical data were reviewed to evaluate outcomes. All 6 biopsied lymph nodes (mean = 1.5cm) were benign on cytology. Follow-up imaging was available for 3 nodes (mean = 2.6 years), with all-cause follow-up for all nodes of 2.2 years. In the follow-up group, 3 lymph nodes (mean = 1.6cm) were monitored (mean = 4.3 years) with all-cause follow-up of 4.7 years. No new cancers, growth, or suspicious features were found in these nodes during follow-up for either group of women. In conclusion, women without history of prior malignancy or systemic disease with incidentally detected, nonpalpable, suspicious regional lymph nodes with an otherwise normal breast ultrasound examination underwent fine needle aspiration or were recommended short-term follow-up ultrasound. No indeterminate features or malignancies were observed at the time of tissue sampling or developed over several years of follow-up. Avoiding sampling of these nodes would reduce patient morbidity and health care costs.
Neuroimaging Clinics of North America | 2015
Mohamed Elbanan; Ahmed M. Amer; Pascal O. Zinn; Rivka R. Colen
JCI insight | 2017
Jan A. Burger; Kelvin Li; Michael J. Keating; Mariela Sivina; Ahmed M. Amer; Naveen Garg; Alessandra Ferrajoli; Xuelin Huang; Hagop M. Kantarjian; William G. Wierda; Susan O’Brien; Marc K. Hellerstein; Scott M. Turner; Claire Emson; Shih-Shih Chen; Xiao-Jie Yan; Dominik Wodarz; Nicholas Chiorazzi
Cancer Letters | 2016
Eugene J. Koay; Ahmed M. Amer; Flavio Egidio Baio; Alexander Ondari; Jason B. Fleming
International Journal of Radiation Oncology Biology Physics | 2016
Chad Tang; Ahmed M. Amer; Brian P. Hobbs; X. Li; Carmen Behrens; E. Para Cuentas; J. Rodriguez Canales; J.Y. Chang; David S. Hong; James W. Welsh; Ignacio I. Wistuba; E.J. Koay
Clinical Cancer Research | 2018
Eugene J. Koay; Yeonju Lee; Vittorio Cristini; John Lowengrub; Ya'an Kang; F. Anthony San Lucas; Brian P. Hobbs; Rong Ye; Dalia Elganainy; Muayad Almahariq; Ahmed M. Amer; Deyali Chatterjee; Huaming Yan; Peter C. Park; Mayrim V. Rios Perez; Dali Li; Naveen Garg; Kim Anna Reiss; Shun Yu; Anil K. Chauhan; Mohamed Zaid; Newsha Nikzad; Robert A. Wolff; Milind Javle; Gauri R. Varadhachary; Rachna T. Shroff; Prajnan Das; Jeffrey E. Lee; Mauro Ferrari; Anirban Maitra