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Dive into the research topics where Alexandre J.S. Ribeiro is active.

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Featured researches published by Alexandre J.S. Ribeiro.


Proceedings of the National Academy of Sciences of the United States of America | 2015

Contractility of single cardiomyocytes differentiated from pluripotent stem cells depends on physiological shape and substrate stiffness.

Alexandre J.S. Ribeiro; Yen-Sin Ang; Ji-Dong Fu; Renee N. Rivas; Tamer M.A. Mohamed; G. Higgs; Deepak Srivastava; Beth L. Pruitt

Significance Human cardiomyocytes differentiated from pluripotent stem cells (hPSC-CMs) have potential as in vitro models of cardiac health and disease but differ from mature cardiomyocytes. In single live engineered hPSC-CMs with physiological shapes, we assayed the mechanical output and activity of sarcomeres and myofibrils in a nondestructive, noninvasive manner. Substrates with physiological stiffness improved contractile activity of patterned hPSC-CMs, as well as calcium flow, mitochondrial organization, electrophysiology, and transverse-tubule formation. The mechanical output and activity of sarcomeres and myofibrils varied as a function of mechanical cues and disrupted cell tension. This study establishes a high-throughput platform for modeling single-cell cardiac contractile activity and yields insight into environmental factors that drive maturation and sarcomere function in hPSC-CMs. Single cardiomyocytes contain myofibrils that harbor the sarcomere-based contractile machinery of the myocardium. Cardiomyocytes differentiated from human pluripotent stem cells (hPSC-CMs) have potential as an in vitro model of heart activity. However, their fetal-like misalignment of myofibrils limits their usefulness for modeling contractile activity. We analyzed the effects of cell shape and substrate stiffness on the shortening and movement of labeled sarcomeres and the translation of sarcomere activity to mechanical output (contractility) in live engineered hPSC-CMs. Single hPSC-CMs were cultured on polyacrylamide substrates of physiological stiffness (10 kPa), and Matrigel micropatterns were used to generate physiological shapes (2,000-µm2 rectangles with length:width aspect ratios of 5:1–7:1) and a mature alignment of myofibrils. Translation of sarcomere shortening to mechanical output was highest in 7:1 hPSC-CMs. Increased substrate stiffness and applied overstretch induced myofibril defects in 7:1 hPSC-CMs and decreased mechanical output. Inhibitors of nonmuscle myosin activity repressed the assembly of myofibrils, showing that subcellular tension drives the improved contractile activity in these engineered hPSC-CMs. Other factors associated with improved contractility were axially directed calcium flow, systematic mitochondrial distribution, more mature electrophysiology, and evidence of transverse-tubule formation. These findings support the potential of these engineered hPSC-CMs as powerful models for studying myocardial contractility at the cellular level.


Biomaterials | 2013

Spatial patterning of endothelium modulates cell morphology, adhesiveness and transcriptional signature.

Ngan F. Huang; Edwina S. Lai; Alexandre J.S. Ribeiro; Stephen Pan; Beth L. Pruitt; Gerald G. Fuller; John P. Cooke

Microscale and nanoscale structures can spatially pattern endothelial cells (ECs) into parallel-aligned organization, mimicking their cellular alignment in blood vessels exposed to laminar shear stress. However, the effects of spatial patterning on the function and global transcriptome of ECs are incompletely characterized. We used both parallel-aligned micropatterned and nanopatterned biomaterials to evaluate the effects of spatial patterning on the phenotype of ECs, based on gene expression profiling, functional characterization of monocyte adhesion, and quantification of cellular morphology. We demonstrate that both micropatterned and aligned nanofibrillar biomaterials could effectively guide EC organization along the direction of the micropatterned channels or nanofibrils, respectively. The ability of ECs to sense spatial patterning cues were abrogated in the presence of cytoskeletal disruption agents. Moreover, both micropatterned and aligned nanofibrillar substrates promoted an athero-resistant EC phenotype by reducing endothelial adhesiveness for monocytes and platelets, as well as by downregulating the expression of adhesion proteins and chemokines. We further found that micropatterned ECs have a transcriptional signature that is unique from non-patterned ECs, as well as from ECs aligned by shear stress. These findings highlight the importance of spatial patterning cues in guiding EC organization and function, which may have clinical relevance in the development of vascular grafts that promote patency.


Methods | 2016

For whom the cells pull: Hydrogel and micropost devices for measuring traction forces.

Alexandre J.S. Ribeiro; Aleksandra K. Denisin; Robin E. Wilson; Beth L. Pruitt

While performing several functions, adherent cells deform their surrounding substrate via stable adhesions that connect the intracellular cytoskeleton to the extracellular matrix. The traction forces that deform the substrate are studied in mechanotrasduction because they are affected by the mechanics of the extracellular milieu. We review the development and application of two methods widely used to measure traction forces generated by cells on 2D substrates: (i) traction force microscopy with polyacrylamide hydrogels and (ii) calculation of traction forces with arrays of deformable microposts. Measuring forces with these methods relies on measuring substrate displacements and converting them into forces. We describe approaches to determine force from displacements and elaborate on the necessary experimental conditions for this type of analysis. We emphasize device fabrication, mechanical calibration of substrates and covalent attachment of extracellular matrix proteins to substrates as key features in the design of experiments to measure cell traction forces with polyacrylamide hydrogels or microposts. We also report the challenges and achievements in integrating these methods with platforms for the mechanical stimulation of adherent cells. The approaches described here will enable new studies to understand cell mechanical outputs as a function of mechanical inputs and advance the understanding of mechanotransduction mechanisms.


The FASEB Journal | 2016

Time-dependent evolution of functional vs. remodeling signaling in induced pluripotent stem cell-derived cardiomyocytes and induced maturation with biomechanical stimulation

Gwanghyun Jung; Giovanni Fajardo; Alexandre J.S. Ribeiro; Kristina Bezold Kooiker; Michael Coronado; Mingming Zhao; Dong Qing Hu; Sushma Reddy; Kazuki Kodo; Krishna Sriram; Paul A. Insel; Joseph C. Wu; Beth L. Pruitt; Daniel Bernstein

Human induced pluripotent stem cell‐derived cardiomyocytes (hiPSC‐CMs) are a powerful platform for uncovering disease mechanisms and assessing drugs for efficacy/toxicity. However, the accuracy with which hiPSC‐CMs recapitulate the contractile and remodeling signaling of adult cardiomyocytes is not fully known. We used β‐adrenergic receptor (β‐AR) signaling as a prototype to determine the evolution of signaling component expression and function during hiPSC‐CM maturation. In “early” hiPSC‐CMs (less than or equal to d 30), β2‐ARs are a primary source of cAMP/PKA signaling. With longer culture, β1‐AR signaling increases: from 0% of cAMP generation at d 30 to 56.8 ± 6.6% by d 60. PKA signaling shows a similar increase: 15.7 ± 5.2% (d30), 49.8 ± 0.5% (d 60), and 71.0 ± 6.1% (d 90). cAMP generation increases 9‐fold from d 30 to 60, with enhanced coupling to remodeling pathways (e.g., Akt and Ca2+/calmodulin‐dependent protein kinase type II) and development of caveolin‐mediated signaling compartmentalization. By contrast, cardiotoxicity induced by chronic β‐AR stimulation, a major component of heart failure, develops much later: 5% cell death at d 30 vs. 55% at d 90. Moreover, β‐AR maturation can be accelerated by biomechanical stimulation. The differential maturation of β‐AR functional vs. remodeling signaling in hiPSC‐CMs has important implications for their use in disease modeling and drug testing. We propose that assessment of signaling be added to the indices of phenotypic maturation of hiPSC‐CMs.—Jung, G., Fajardo, G., Ribeiro, A. J. S., Kooiker, K. B., Coronado, M., Zhao, M., Hu, D.‐Q., Reddy, S., Kodo, K., Sriram, K., Insel, P. A., Wu, J. C., Pruitt, B. L., Bernstein, D. Time‐dependent evolution of functional vs. remodeling signaling in induced pluripotent stem cell‐derived cardiomyocytes and induced maturation with biomechanical stimulation. FASEB J. 30, 1464–1479 (2016). www.fasebj.org


ACS Applied Materials & Interfaces | 2014

Stable, covalent attachment of laminin to microposts improves the contractility of mouse neonatal cardiomyocytes.

Alexandre J.S. Ribeiro; Kathia Zaleta-Rivera; Euan A. Ashley; Beth L. Pruitt

The mechanical output of contracting cardiomyocytes, the muscle cells of the heart, relates to healthy and disease states of the heart. Culturing cardiomyocytes on arrays of elastomeric microposts can enable inexpensive and high-throughput studies of heart disease at the single-cell level. However, cardiomyocytes weakly adhere to these microposts, which limits the possibility of using biomechanical assays of single cardiomyocytes to study heart disease. We hypothesized that a stable covalent attachment of laminin to the surface of microposts improves cardiomyocyte contractility. We cultured cells on polydimethylsiloxane microposts with laminin covalently bonded with the organosilanes 3-glycidoxypropyltrimethoxysilane and 3-aminopropyltriethoxysilane with glutaraldehyde. We measured displacement of microposts induced by the contractility of mouse neonatal cardiomyocytes, which attach better than mature cardiomyocytes to substrates. We observed time-dependent changes in contractile parameters such as micropost deformation, contractility rates, contraction and relaxation speeds, and the times of contractions. These parameters were affected by the density of laminin on microposts and by the stability of laminin binding to micropost surfaces. Organosilane-mediated binding resulted in higher laminin surface density and laminin binding stability. 3-glycidoxypropyltrimethoxysilane provided the highest laminin density but did not provide stable protein binding with time. Higher surface protein binding stability and strength were observed with 3-aminopropyltriethoxysilane with glutaraldehyde. In cultured cardiomyocytes, contractility rate, contraction speeds, and contraction time increased with higher laminin stability. Given these variations in contractile function, we conclude that binding of laminin to microposts via 3-aminopropyltriethoxysilane with glutaraldehyde improves contractility observed by an increase in beating rate and contraction speed as it occurs during the postnatal maturation of cardiomyocytes. This approach is promising for future studies to mimic in vivo tissue environments.


JCI insight | 2017

A BAG3 chaperone complex maintains cardiomyocyte function during proteotoxic stress

Luke M. Judge; Juan A. Perez-Bermejo; Annie Truong; Alexandre J.S. Ribeiro; Jennie C. Yoo; Christina L. Jensen; Mohammad A. Mandegar; Nathaniel Huebsch; Robyn M. Kaake; Po-Lin So; Deepak Srivastava; Beth L. Pruitt; Nevan J. Krogan; Bruce R. Conklin

Molecular chaperones regulate quality control in the human proteome, pathways that have been implicated in many diseases, including heart failure. Mutations in the BAG3 gene, which encodes a co-chaperone protein, have been associated with heart failure due to both inherited and sporadic dilated cardiomyopathy. Familial BAG3 mutations are autosomal dominant and frequently cause truncation of the coding sequence, suggesting a heterozygous loss-of-function mechanism. However, heterozygous knockout of the murine BAG3 gene did not cause a detectable phenotype. To model BAG3 cardiomyopathy in a human system, we generated an isogenic series of human induced pluripotent stem cells (iPSCs) with loss-of-function mutations in BAG3. Heterozygous BAG3 mutations reduced protein expression, disrupted myofibril structure, and compromised contractile function in iPSC-derived cardiomyocytes (iPS-CMs). BAG3-deficient iPS-CMs were particularly sensitive to further myofibril disruption and contractile dysfunction upon exposure to proteasome inhibitors known to cause cardiotoxicity. We performed affinity tagging of the endogenous BAG3 protein and mass spectrometry proteomics to further define the cardioprotective chaperone complex that BAG3 coordinates in the human heart. Our results establish a model for evaluating protein quality control pathways in human cardiomyocytes and their potential as therapeutic targets and susceptibility factors for cardiac drug toxicity.


PLOS ONE | 2018

Controlling cell shape on hydrogels using lift-off protein patterning

Jens Moeller; Aleksandra K. Denisin; Joo Yong Sim; Robin E. Wilson; Alexandre J.S. Ribeiro; Beth L. Pruitt

Polyacrylamide gels functionalized with extracellular matrix proteins are commonly used as cell culture platforms to evaluate the combined effects of extracellular matrix composition, cell geometry and substrate rigidity on cell physiology. For this purpose, protein transfer onto the surface of polyacrylamide hydrogels must result in geometrically well-resolved micropatterns with homogeneous protein distribution. Yet the outcomes of micropatterning methods have not been pairwise evaluated against these criteria. We report a high-fidelity photoresist lift-off patterning method to pattern ECM proteins on polyacrylamide hydrogels with elastic moduli ranging from 5 to 25 kPa. We directly compare the protein transfer efficiency and pattern geometrical accuracy of this protocol to the widely used microcontact printing method. Lift-off patterning achieves higher protein transfer efficiency, increases pattern accuracy, increases pattern yield, and reduces variability of these factors within arrays of patterns as it bypasses the drying and transfer steps of microcontact printing. We demonstrate that lift-off patterned hydrogels successfully control cell size and shape and enable long-term imaging of actin intracellular structure and lamellipodia dynamics when we culture epithelial cells on these substrates.


international conference on micro electro mechanical systems | 2012

Uniaxial cell stretcher enables high resolution live cell imaging

Joo Yong Sim; N. Borghi; Alexandre J.S. Ribeiro; M. Sorokina; Olga G. Shcherbakova; D. Ramallo; Alexander R. Dunn; William James Nelson; Beth L. Pruitt

Imaging adherent cells cultured on commercially available stretchable substrates presents challenges for high-magnification objectives. Namely, short working distances between the objective and focal plane, a moving focal plane due to Poissons contraction with stretching, and issues of optical transparency or non-matching refractive indices. Beyond the advantages of visualizing biological structures in detail, we seek to implement specialized high-resolution fluorescence microscopy techniques such as Förster Resonance Energy Transfer (FRET) microscopy while stretching. Enabling FRET imaging of stretched cells provides a powerful tool for modern cell biology and mechanobiology [1]. FRET techniques require high magnification as well as a stable focal plane for imaging. Here, we address this requirement for stretchable substrates with a microfabricated cell strain device suitable for live cell imaging while allowing high-resolution FRET microscopy of cells. We adapt a uniaxial cell stretching concept previously demonstrated by Huh [2] for high magnification imaging by using thin bottom channels and membranes supported above an inverted oil immersion objective. This work presents a major advance for research in cell mechanobiology as it enables direct mechanical actuation combined with imaging of FRET probes engineered to report strained proteins in live cells.


bioRxiv | 2017

Controlling cell shape on hydrogels using lift-off patterning

Jens Moeller; Aleksandra K. Denisin; Joo Yong Sim; Robin E. Wilson; Alexandre J.S. Ribeiro; Beth L. Pruitt

Polyacrylamide gels functionalized with extracellular matrix (ECM) proteins are commonly used as cell culture platforms to evaluate the combined effects of ECM composition, cell geometry and substrate rigidity on cell physiology. For this purpose, protein transfer onto the surface of polyacrylamide hydrogels must result in geometrically well-resolved micropatterns with homogeneous protein distribution. Yet the outcomes of micropatterning methods have not been pairwise evaluated against these criteria. We report a high fidelity photoresist lift-off patterning (LOP) method to pattern ECM proteins on polyacrylamide hydrogels ranging from 5 to 25 kPa. We directly compare the protein transfer efficiency and pattern geometrical accuracy of this protocol to the widely used microcontact printing (µCP) method. LOP achieves higher protein transfer efficiency, increases pattern accuracy, and reduces variability of these factors within arrays of patterns as it bypasses the drying and transfer steps of microcontact printing. We demonstrate that lift-off patterned hydrogels successfully control cell size and shape when we culture epithelial cells on these substrates.


Cell | 2016

Disease Model of GATA4 Mutation Reveals Transcription Factor Cooperativity in Human Cardiogenesis

Yen-Sin Ang; Renee N. Rivas; Alexandre J.S. Ribeiro; Rohith Srivas; Janell Rivera; Nicole R. Stone; Karishma Pratt; Tamer M.A. Mohamed; Ji-Dong Fu; C. Ian Spencer; Nathaniel D. Tippens; Molong Li; Anil Narasimha; Ethan Radzinsky; Anita J. Moon-Grady; Haiyuan Yu; Beth L. Pruitt; Michael Snyder; Deepak Srivastava

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Yen-Sin Ang

Icahn School of Medicine at Mount Sinai

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Ji-Dong Fu

Case Western Reserve University

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