Amy B. Borde

Multiscale Analysis of Restoration Priorities for Marine Shoreline Planning

Planners are being called on to prioritize marine shorelines for conservation status and restoration action. This study documents an approach to determining the management strategy most likely to succeed based on current conditions at local and landscape scales. The conceptual framework based in restoration ecology pairs appropriate restoration strategies with sites based on the likelihood of producing long-term resilience given the condition of ecosystem structures and processes at three scales: the shorezone unit (site), the drift cell reach (nearshore marine landscape), and the watershed (terrestrial landscape). The analysis is structured by a conceptual ecosystem model that identifies anthropogenic impacts on targeted ecosystem functions. A scoring system, weighted by geomorphic class, is applied to available spatial data for indicators of stress and function using geographic information systems. This planning tool augments other approaches to prioritizing restoration, including historical conditions and change analysis and ecosystem valuation.

Evaluating Cumulative Ecosystem Response to Restoration Projects in the Columbia River Estuary, Annual Report 2006

The goal of this multi-year study (2004-2010) is to develop a methodology to evaluate the cumulative effects of multiple habitat restoration projects intended to benefit ecosystems supporting juvenile salmonids in the lower Columbia River and estuary. Literature review in 2004 revealed no existing methods for such an evaluation and suggested that cumulative effects could be additive or synergistic. Field research in 2005, 2006, and 2007 involved intensive, comparative studies paired by habitat type (tidal swamp vs. marsh), trajectory (restoration vs. reference site), and restoration action (tide gate vs. culvert vs. dike breach). The field work established two kinds of monitoring indicators for eventual cumulative effects analysis: core and higher-order indicators. Management implications of limitations and applications of site-specific effectiveness monitoring and cumulative effects analysis were identified.

Climate-linked Mechanisms Driving Spatial and Temporal Variation in Eelgrass (Zostera marina L.) Growth and Assemblage Structure in Pacific Northwest Estuaries, U.S.A.

ABSTRACT Thom, R.; Southard, S., and Borde, A., 2014. Climate-linked mechanisms driving spatial and temporal variations in eelgrass (Zostera marina L.) growth and assemblage structure in Pacific Northwest estuaries, USA. Using laboratory experiments on temperature and leaf metabolism, and field data sets from Washington, between 1991 and 2013, we developed lines of evidence showing that variations in water temperature, mean sea level, and desiccation stress appear to drive spatial and temporal variations in eelgrass (Zostera marina). Variations in the Oceanic Niño Index (ONI) and mean sea level (MSL), especially during the strong 1997–2001 El Niño-La Niña event, corresponded with variations in leaf growth rate of an intertidal population. Field studies suggested that this variation was associated with both desiccation period and temperature. Subtidal eelgrass shoot density recorded annually over a 10-year period was lowest during the warm and cool extremes of sea surface temperature. These periods corresponded to the extremes in the ONI. Variations in density of a very low intertidal population in a turbid estuary were explained by both variations in temperature and light reaching the plants during periods of higher MSL. These results show complex interactions between water-level variation, temperature and light as mechanisms regulating variation in eelgrass, which complicates the ability to predict the effects of climate variation and change on this important resource. Because of the extensive wide geographic distribution of eelgrass, its tractability for study, and its responsiveness to climate, this and other seagrass species should be considered useful indicators of the effects of climate variation and change on marine and estuarine ecosystems.

Lower Columbia River and Estuary Ecosystem Restoration Program Reference Site Study: 2011 Restoration Analysis - FINAL REPORT

The Reference Site (RS) study is part of the research, monitoring, and evaluation (RME) effort developed by the Action Agencies (Bonneville Power Administration [BPA], U.S. Army Corps of Engineers, Portland District [USACE], and U.S. Bureau of Reclamation) in response to Federal Columbia River Power System (FCRPS) Biological Opinions (BiOp). While the RS study was initiated in 2007, data have been collected at relatively undisturbed reference wetland sites in the LCRE by PNNL and collaborators since 2005. These data on habitat structural metrics were previously summarized to provide baseline characterization of 51 wetlands throughout the estuarine and tidal freshwater portions of the 235-km LCRE; however, further analysis of these data has been limited. Therefore, in 2011, we conducted additional analyses of existing field data previously collected for the Columbia Estuary Ecosystem Restoration Program (CEERP) - including data collected by PNNL and others - to help inform the multi-agency restoration planning and ecosystem management work underway in the LCRE.

Ecology of Juvenile Salmon in Shallow Tidal Freshwater Habitats of the Lower Columbia River, 2007–2010

The TFM study was designed to investigate the ecology and early life history of juvenile salmonids within shallow (<5 m) tidal freshwater habitats of the LCRE. We started collecting field data in June 2007. Since then, monthly sampling has occurred in the vicinity of the Sandy River delta (rkm 192–208) and at other sites and times in lower river reaches of tidal freshwater (rkm 110 to 141). This report provides a comprehensive synthesis of data covering the field period from June 2007 through April 2010.

Evaluation of Cumulative Ecosystem Response to Restoration Projects in the Lower Columbia River and Estuary, 2010

Draft annual report for the Cumulative Effects Study for the US Army Corps of Engineers, Portland District

A Synthesis of Environmental and Plant Community Data for Tidal Wetland Restoration Planning in the Lower Columbia River and Estuary

This report reanalyzes and synthesizes previously existing environmental and plant community data collected by PNNL at 55 tidal wetlands and 3 newly restored sites in the lower Columbia River and estuary (LCRE) between 2005 and 2011. Whereas data were originally collected for various research or monitoring objectives of five studies, the intent of this report is to provide only information that will have direct utility in planning tidal wetland restoration projects. Therefore, for this report, all tidal wetland data on plants and the physical environment, which were originally developed and reported by separate studies, were tabulated and reanalyzed as a whole. The geographic scope of the data collected in this report is from Bonneville Lock and Dam to the mouth of the Columbia River

King County Nearshore Habitat Mapping Data Report: Picnic Point to Shilshole Bay Marina

The objective of this study is to provide accurate, georeferenced maps of benthic habitats to assist in the siting of a new wastewater treatment plant outfall and the assessment of habitats of endangered, threatened, and economically important species. The mapping was conducted in the fall of 1999 using two complementary techniques: side-scan sonar and underwater videography. Products derived from these techniques include geographic information system (GIS) compatible polygon data of substrate type and vegetation cover, including eelgrass and kelp. Additional GIS overlays include underwater video track line data of total macroalgae, selected macroalgal species, fish, and macroinvertebrates. The combined tools of geo-referenced side-scan sonar and underwater video is a powerful technique for assessing and mapping of nearshore habitat in Puget Sound. Side-scan sonar offers the ability to map eelgrass with high spatial accuracy and resolution, and provides information on patch size, shape, and coverage. It also provides information on substrate change and location of specific targets (e.g., piers, docks, pilings, large boulders, debris piles). The addition of underwater video is a complementary tool providing both groundtruthing for the sonar and additional information on macro fauna and flora. As a groundtruthing technique, the video was able to confirm differences between substrate types, as well as detect subtle spatial changes in substrate. It also verified information related to eelgrass, including the density classification categories and the type of substrate associated with eelgrass, which could not be determined easily with side- scan sonar. Video is also a powerful tool for mapping the location of macroalgae, (including kelp and Ulva), fish and macroinvertebrates. The ability to geo-locate these resources in their functional habitat provides an added layer of information and analytical potential.

The Oncor Geodatabase for the Columbia Estuary Ecosystem Restoration Program: Handbook of Data Reduction Procedures, Workbooks, and Exchange Templates

This Handbook of Data Reduction Procedures, Workbooks, and Exchange Templates is designed to support the Oncor geodatabase for the Columbia Estuary Ecosystem Restoration Program (CEERP). The following data categories are covered: water-surface elevation and temperature, sediment accretion rate, photo points, herbaceous wetland vegetation cover, tree plots and site summaries, fish catch and density, fish size, fish diet, fish prey, and Chinook salmon genetic stock identification. The handbook is intended for use by scientists collecting monitoring and research data for the CEERP. The ultimate goal of Oncor is to provide quality, easily accessible, geospatial data for synthesis and evaluation of the collective performance of CEERP ecosystem restoration actions at a program scale.

The Oncor Geodatabase for the Columbia Estuary Ecosystem Restoration Program: Annual Report, 2012

Pacific Northwest National Laboratory (PNNL) conducted this project for the U.S. Army Corps of Engineers, Portland District (Corps). The purpose of the project is to develop a geospatial, web-accessible database (called “Oncor”) for action effectiveness and related data from monitoring and research efforts for the Columbia Estuary Ecosystem Restoration Program (CEERP). The intent is for the Oncor database to enable synthesis and evaluation, the results of which can then be applied in subsequent CEERP decision-making. This is the first annual report in what is expected to be a 3- to 4-year project, which commenced on February 14, 2012.