Anna Benedetti

Thermal analysis in the evaluation of compost stability: a comparison with humification parameters

Characterization of organic matter of six composts from agroindustrial wastes was carried out by both chemical analysis and thermal analysis in order to assess their level of stability. Degree of humification (DH%) and index of humification (HI) were calculated after extraction, fractionation and analysis of the organic carbon from composts. Differential Scanning Calorimetry (DSC) and thermogravimetry (TG) were simultaneously performed in oxidizing conditions on whole ground composts. Thermoanalitical data resulted to be useful in integrating quantitative information coming from chemical analysis of humified fraction of compost organic matter. Particularly, DSC curves allow to distinguish between well and poor stabilized composts, and information deriving from weight losses, registered by TG curves, permits to individuate a thermoanalytical parameter (R1) that resulted to be well correlated to humification parameters DH% and HI.

Soil bacterial community response to differences in agricultural management along with seasonal changes in a Mediterranean region

Land-use change is considered likely to be one of main drivers of biodiversity changes in grassland ecosystems. To gain insight into the impact of land use on the underlying soil bacterial communities, we aimed at determining the effects of agricultural management, along with seasonal variations, on soil bacterial community in a Mediterranean ecosystem where different land-use and plant cover types led to the creation of a soil and vegetation gradient. A set of soils subjected to different anthropogenic impact in a typical Mediterranean landscape, dominated by Quercus suber L., was examined in spring and autumn: a natural cork-oak forest, a pasture, a managed meadow, and two vineyards (ploughed and grass covered). Land uses affected the chemical and structural composition of the most stabilised fractions of soil organic matter and reduced soil C stocks and labile organic matter at both sampling season. A significant effect of land uses on bacterial community structure as well as an interaction effect between land uses and season was revealed by the EP index. Cluster analysis of culture-dependent DGGE patterns showed a different seasonal distribution of soil bacterial populations with subgroups associated to different land uses, in agreement with culture-independent T-RFLP results. Soils subjected to low human inputs (cork-oak forest and pasture) showed a more stable bacterial community than those with high human input (vineyards and managed meadow). Phylogenetic analysis revealed the predominance of Proteobacteria, Actinobacteria, Bacteroidetes, and Firmicutes phyla with differences in class composition across the site, suggesting that the microbial composition changes in response to land uses. Taken altogether, our data suggest that soil bacterial communities were seasonally distinct and exhibited compositional shifts that tracked with changes in land use and soil management. These findings may contribute to future searches for bacterial bio-indicators of soil health and sustainable productivity.

StreamingTrim 1.0: a Java software for dynamic trimming of 16S rRNA sequence data from metagenetic studies

Next‐generation sequencing technologies are extensively used in the field of molecular microbial ecology to describe taxonomic composition and to infer functionality of microbial communities. In particular, the so‐called barcode or metagenetic applications that are based on PCR amplicon library sequencing are very popular at present. One of the problems, related to the utilization of the data of these libraries, is the analysis of reads quality and removal (trimming) of low‐quality segments, while retaining sufficient information for subsequent analyses (e.g. taxonomic assignment). Here, we present StreamingTrim, a DNA reads trimming software, written in Java, with which researchers are able to analyse the quality of DNA sequences in fastq files and to search for low‐quality zones in a very conservative way. This software has been developed with the aim to provide a tool capable of trimming amplicon library data, retaining as much as taxonomic information as possible. This software is equipped with a graphical user interface for a user‐friendly usage. Moreover, from a computational point of view, StreamingTrim reads and analyses sequences one by one from an input fastq file, without keeping anything in memory, permitting to run the computation on a normal desktop PC or even a laptop. Trimmed sequences are saved in an output file, and a statistics summary is displayed that contains the mean and standard deviation of the length and quality of the whole sequence file. Compiled software, a manual and example data sets are available under the BSD‐2‐Clause License at the GitHub repository at https://github.com/GiBacci/StreamingTrim/.

Evaluation of Organic Matter Stability During the Composting Process of Agroindustrial Wastes

Composting of wastes from citrus industrial processing (pastazzo and sludge) was studied in order to evaluate the evolution of organic matter during the process and to individuate chemical and/or biochemical techniques able to set the stability of the final product. Composts from two open-air piles of different composition were sampled every month during the whole period of composting (5 months) and the organic matter of each sample was characterised by chemical and biochemical techniques. Humification rate (HR%) and humification index (HI) were determined. Extracted organic matter of the six samples collected for each compost was investigated by isoelectric-focusing technique (IEF). The biochemical analysis were based on the study of C-mineralisation after the addition of each collected sample to soil. Results obtained clearly demonstrated organic matter evolution during composting processes. Humification rates increased and humification indexes decreased over time, while extracted organic matter showed electrophoretic behaviour typical of stabilised organic compounds. Moreover, mineralisation patterns confirmed the increased level of organic matter stability during the composting process.

Assessment of safety and efficiency of nitrogen organic fertilizers from animal-based protein hydrolysates—a laboratory multidisciplinary approach

BACKGROUND Protein hydrolysates or hydrolysed proteins (HPs) are high-N organic fertilizers allowing the recovery of by-products (leather meal and fluid hydrolysed proteins) otherwise disposed of as polluting wastes, thus enhancing matter and energy conservation in agricultural systems while decreasing potential pollution. Chemical and biological characteristics of HPs of animal origin were analysed in this work to assess their safety, environmental sustainability and agricultural efficacy as fertilizers. Different HPs obtained by thermal, chemical and enzymatic hydrolytic processes were characterized by Fourier transform infrared spectroscopy and sodium dodecyl sulfate polyacrylamide gel electrophoresis, and their safety and efficacy were assessed through bioassays, ecotoxicological tests and soil biochemistry analyses. RESULTS HPs can be discriminated according to their origin and hydrolysis system by proteomic and metabolomic methods. Three experimental systems, soil microbiota, yeast and plants, were employed to detect possible negative effects exerted by HPs. The results showed that these compounds do not significantly interfere with metabolomic activity or the reproductive system. CONCLUSION The absence of toxic and genotoxic effects of the hydrolysates prepared by the three hydrolytic processes suggests that they do not negatively affect eukaryotic cells and soil ecosystems and that they can be used in conventional and organic farming as an important nitrogen source derived from otherwise highly polluting by-products.

Use of biochemical indexes and changes in organic matter dynamics in a Mediterranean environment: a comparison between soils under arable and set-aside managements

Abstract The aims of this study were to evaluate the influence of different agronomic practices on organic matter turnover and on microbiological activity of two soils of the Castelporziano Tenuta Reserve. The first of the two soils is arable, currently cultivated with oats, while the second is a set-aside soil which has been semi-reforested in the last ten years. Results revealed that set-aside soil was characterised by slower organic carbon turnover and better humification efficiency with respect to the arable soil. This study confirms that the restoration practice can establish a self-sustaining plant and microrganisms community, which is naturally evolving in the direction of the original, stable ecosystem.

Relationship between the fixed ammonium and the mineralization of the organic nitrogen in soil

Potentially mineralizable nitrogen and interlayer ammonium-nitrogen pools of the soil were determined. The mineralization process has an influence on fixation and release of interlayer ammonium. During long-term incubation for determining of the potentially mineralizable nitrogen of soil, the mineralized nitrogen could be affected by the realease of inorganic nitrogen from the other pools, particularly from the interlayer ammonium-nitrogen pool.

Saline soils in in Italy: distribution, ecological processes and socioeconomic issues

Soils are crucial for crop production and for the major ecosystem services. They preserve and sustain life. Salinity is one of the main soil threats that reduce soil fertility and affect the crop production. In recent times, a great attention has been paid to the general shortage of arable land, and to the increasing demand for ecological restoration of areas affected by secondary salinization processes. Microorganisms in these habitats may share a strategy, may have developed multiple adaptations for maintaining populations, and cope eventually to extreme conditions by altruistic or cooperative behavior for maintaining their population active. The understanding and the knowledge of the composition and distribution of microorganisms in natural habitats can be interesting for ecological reasons and it is important to develop new restoration strategy of salt-affected soils.