Network


Latest external collaboration on country level. Dive into details by clicking on the dots.

Hotspot


Dive into the research topics where Arata Yoneda is active.

Publication


Featured researches published by Arata Yoneda.


Plant Molecular Biology | 2005

Characterization of plant Aurora kinases during mitosis.

Akira Kawabe; Sachihiro Matsunaga; Katsuyuki Nakagawa; Daisuke Kurihara; Arata Yoneda; Seiichiro Hasezawa; Susumu Uchiyama; Kiichi Fukui

The Aurora kinase family is a well-characterized serine/threonine protein kinase family that regulates different processes of mitotic events. Although functions of animal and yeast Aurora kinases have been analyzed, plant aurora kinases were not identified and characterized. We identified three Aurora kinase orthologs in Arabidopsis thaliana and designated these as AtAUR1, AtAUR2, and AtAUR3. These AtAURs could phosphorylate serine 10 in histone H3, in vitro. Dynamic analyses of GFP-fused AtAUR proteins revealed that AtAUR1 and AtAUR2 localized at the nuclear membrane in interphase and located in mitotic spindles during cell division. AtAUR1 also localized in the cell plates. AtAUR3 showed dot-like distribution on condensed chromosomes at prophase and then localized at the metaphase plate. At late anaphase, AtAUR3 is evenly localized on chromosomes. The localization of AtAUR3 during mitosis is very similar to that of phosphorylated histone H3. Interestingly, an overexpression of AtAUR3 induces disassembly of spindle microtubules and alteration of orientation of cell division. Our results indicate that plant Aurora kinases have different characters from that of Aurora kinases of other eukaryotes.


Protoplasma | 2003

Roles of actin-depleted zone and preprophase band in determining the division site of higher-plant cells, a tobacco BY-2 cell line expressing GFP-tubulin.

H. Hoshino; Arata Yoneda; Fumi Kumagai; Seiichiro Hasezawa

Summary.The mode of cytokinesis, especially in determining the site of cell division, is not well understood in higher-plant cells. The division site appears to be predicted by the preprophase band of microtubules that develop with the phragmosome, an intracellular structure of the cytoplasm suspending the nucleus and the mitotic apparatus in the center. As the preprophase band disappears during mitosis, it is thought to leave some form of “memory” on the plasma membrane to guide the growth of the new cell plate at cytokinesis. However, the intrinsic nature of this “memory” remains to be clarified. In addition to microtubules, microfilaments also dynamically change forms during cell cycle transition from the late G2 to the early G1 phase. We have studied the relationships between microtubules and microfilaments in tobacco BY-2 cells and transgenic BY-2 cells expressing a fusion protein of green-fluorescent protein and tubulin. At the late G2 phase, microfilaments colocalize with the preprophase band of microtubules. However, an actin-depleted zone which appears at late prometaphase is observed around the chromosomes, especially at metaphase, but also throughout anaphase. To study the functions of the actin-depleted zone, we disrupted the microfilament structures with bistheonellide A, a novel macrolide that depolymerizes microfilaments very rapidly even at low concentrations. The division planes became disorganized when the drug was added to synchronized BY-2 cells before the appearance of the actin-depleted zone. In contrast, the division planes appeared smooth, as in control cells, when the drug was added after the appearance of the actin-depleted zone. These results suggest that the actin-depleted zone may participate in the demarcation of the division site at the final stage of cell division in higher plants.


Plant Journal | 2010

Cobtorin target analysis reveals that pectin functions in the deposition of cellulose microfibrils in parallel with cortical microtubules

Arata Yoneda; Takuya Ito; Takumi Higaki; Natsumaro Kutsuna; Tamio Saito; Takeshi Ishimizu; Seiichiro Hasezawa; Minami Matsui; Taku Demura

Cellulose and pectin are major components of primary cell walls in plants, and it is believed that their mechanical properties are important for cell morphogenesis. It has been hypothesized that cortical microtubules guide the movement of cellulose microfibril synthase in a direction parallel with the microtubules, but the mechanism by which this alignment occurs remains unclear. We have previously identified cobtorin as an inhibitor that perturbs the parallel relationship between cortical microtubules and nascent cellulose microfibrils. In this study, we searched for the protein target of cobtorin, and we found that overexpression of pectin methylesterase and polygalacturonase suppressed the cobtorin-induced cell-swelling phenotype. Furthermore, treatment with polygalacturonase restored the deposition of cellulose microfibrils in the direction parallel with cortical microtubules, and cobtorin perturbed the distribution of methylated pectin. These results suggest that control over the properties of pectin is important for the deposition of cellulose microfibrils and/or the maintenance of their orientation parallel with the cortical microtubules.


Protoplasma | 2007

Recent progress in living cell imaging of plant cytoskeleton and vacuole using fluorescent-protein transgenic lines and three-dimensional imaging

Arata Yoneda; Natsumaro Kutsuna; Takumi Higaki; Yoshihisa Oda; Toshio Sano; Seiichiro Hasezawa

Summary.In higher-plant cells, microtubules, actin microfilaments, and vacuoles play important roles in a variety of cellular events, including cell division, morphogenesis, and cell differentiation. These intracellular structures undergo dynamic changes in their shapes and functions during cell division and differentiation, and to analyse these sequential structural changes, the vital labelling technique, using the green-fluorescent protein or other fluorescent proteins, has commonly been used to follow the localisation and translocation of specific proteins. To visualise microtubules, actin filaments, and vacuoles, several strategies are available for selecting the appropriate fluorescent-protein fusion partner: microtubule-binding proteins, tubulin, and plus-end-tracking proteins are most suitable for microtubule labelling; the actin binding domain of mouse talin and plant fimbrin for actin microfilament visualisation; and the tonoplast-intrinsic proteins and syntaxin-related proteins for vacuolar imaging. In addition, three-dimensional reconstruction methods are indispensable for localising the widely distributed organelles within the cell. The maximum intensity projection method is suitable for cytoskeletal structures, while contour-based surface modelling possesses many advantages for vacuolar membranes. In this article, we summarise the recent progress in living cell imaging of the plant cytoskeleton and vacuoles using various fusions with green-fluorescent proteins and three-dimensional imaging techniques.


European Journal of Cell Biology | 2003

Origin of cortical microtubules organized at M/G1 interface: Recruitment of tubulin from phragmoplast to nascent microtubules

Arata Yoneda; Seiichiro Hasezawa

The origin of cortical microtubules (CMTs) was investigated in transgenic BY-2 cells stably expressing a GFP (green fluorescent protein) -tubulin fusion protein (BY-GT16). In a previous study, we found that CMTs were initially organized in the perinuclear regions but then elongated to reach the cell cortex where they formed bright spots, and that the appearance of parallel MTs from the bright spots was followed by the appearance of transverse MTs (Kumagai et al., Plant Cell Physiol. 42, 723-732, 2001). In this study, we investigated the migration of tubulin to the reorganization sites of CMTs at the M/G1 interface. After synchronization of the BY-GT16 cells by aphidicolin, the localization of GFP-tubulin was monitored and analyzed by deconvolution microscopy. GFP-tubulin was found to accumulate on the nuclear surface near the cell plate at the final stage of phragmoplast collapse. Subsequently, GFP-tubulin accumulated again on the nuclear surface opposite the cell plate, where nascent MTs elongated to the cell cortex. The significance of these observations on the mode of CMT organization is discussed.


Plant Science | 2012

Arabidopsis mitochondrial protein TIM50 affects hypocotyl cell elongation through intracellular ATP level.

Shailesh Kumar; Takeshi Yoshizumi; Hiroaki Hongo; Arata Yoneda; Hiroko Hara; Hidefumi Hamasaki; Naoki Takahashi; Noriko Nagata; Hiroaki Shimada; Minami Matsui

The plant hypocotyl is an excellent model for the analysis of cell elongation. We have characterized a knockout mutant of the Arabidopsis TIM50 gene that showed a reduction in the hypocotyls length of etiolated seedlings. We also found that a knockout of TIM50 caused enlargement and deformation of the mitochondrial structure and a reduction in intracellular ATP levels. TIM50 is a component of the mitochondrial TIM23 inner membrane protein complex and is involved in the import of mitochondrial proteins. The short hypocotyl phenotype was recovered by the addition of Compound C, an inhibitor of AMPK. Thus, the mitochondrial ATP level controls cell elongation in Arabidopsis hypocotyls through possible signaling via AMPK.


Archive | 2004

Dynamic Behavior of Microtubules and Vacuoles at M/G1 Interface Observed in Living Tobacco BY-2 Cells

Fumi Kumagai; Arata Yoneda; Natsumaro Kutsuna; Seiichiro Hasezawa

Plant cells expand mainly by water uptake into vacuoles. Although the turgor pressure of the cells is isotropic, most of the cells elongate anisotropically. This transformation of the isotropic force into the anisotropic growth is achieved by the establishment of “hoops” consisting of cellulose microfibrils (CMFs) in the cell walls. The cells can only elongate perpendicular to the newly organized CMFs, deposited at the innermost layer of the cell wall. The orientation of CMFs has been thought to be regulated by cortical microtubules (CMTs) under the cell cortex; from the observations that they run parallel to the CMFs, disturbance of CMTs resulted in aberrant cell elongation and the mutants with abnormal CMTs showed defects in elongation (for a recent review, see Baskin 2001). During the cell cycle progression, CMTs are observed only during interphase, and are then thoroughly destroyed during M phase. While CMTs are absent for about 2 h in BY-2 cells, are their any regulatory mechanisms to inhibit cell expansion into aberrant directions? And how do the daughter cells restore the next direction of expansion properly at the M/G1 interface?


Archive | 2007

Cytoskeletal and Vacuolar Dynamics During Plant Cell Division: Approaches UsingStructure-Visualized Cells

Toshio Sano; Natsumaro Kutsuna; Takumi Higaki; Yoshihisa Oda; Arata Yoneda; Fumi Kumagai-Sano; Seiichiro Hasezawa

During cell cycle progression, intra-cellular cytoskeletal and membrane structures undergo dynamicchanges in their form and localization, which in turn regulate further progress of the cell cycle. Despitethe considerable insights into these intra-cellular structures obtained from immuno-fluorescence microscopy,the need for chemical fixation has limited the acquired images to only static ones. In contrast, more recentfluorescent protein techniques used to visualize these structures in living cell systems have allowed investigationsof their dynamics. The visualization of microtubules (MTs) by using the green fluorescent protein (GFP)and the analysis of MT-associated proteins will be presented. In addition, to further understand plantcell cycle progression, dynamics of actin microfilaments (MFs) and vacuolar membranes (VMs) visualized withfluorescent proteins are also reviewed.


Plant and Cell Physiology | 2001

Fate of Nascent Microtubules Organized at the M/G1 Interface, as Visualized by Synchronized Tobacco BY-2 Cells Stably Expressing GFP-Tubulin: Time-Sequence Observations of the Reorganization of Cortical Microtubules in Living Plant Cells

Fumi Kumagai; Arata Yoneda; Taichiro Tomida; Toshio Sano; Toshiyuki Nagata; Seiichiro Hasezawa


Plant and Cell Physiology | 2007

Chemical Genetic Screening Identifies a Novel Inhibitor of Parallel Alignment of Cortical Microtubules and Cellulose Microfibrils

Arata Yoneda; Takumi Higaki; Natsumaro Kutsuna; Yoichi Kondo; Seiichiro Hasezawa; Minami Matsui

Collaboration


Dive into the Arata Yoneda's collaboration.

Top Co-Authors

Avatar
Top Co-Authors

Avatar
Top Co-Authors

Avatar
Top Co-Authors

Avatar
Top Co-Authors

Avatar
Top Co-Authors

Avatar

Minami Matsui

Kihara Institute for Biological Research

View shared research outputs
Top Co-Authors

Avatar
Top Co-Authors

Avatar

Taku Demura

Nara Institute of Science and Technology

View shared research outputs
Top Co-Authors

Avatar

Yoshihisa Oda

National Institute of Genetics

View shared research outputs
Top Co-Authors

Avatar
Researchain Logo
Decentralizing Knowledge