Chayanard Phukhamsakda

Fungal diversity notes 1–110: taxonomic and phylogenetic contributions to fungal species

This paper is a compilation of notes on 110 fungal taxa, including one new family, 10 new genera, and 76 new species, representing a wide taxonomic and geographic range. The new family, Paradictyoarthriniaceae is introduced based on its distinct lineage in Dothideomycetes and its unique morphology. The family is sister to Biatriosporaceae and Roussoellaceae. The new genera are Allophaeosphaeria (Phaeosphaeriaceae), Amphibambusa (Amphisphaeriaceae), Brunneomycosphaerella (Capnodiales genera incertae cedis), Chaetocapnodium (Capnodiaceae), Flammeascoma (Anteagloniaceae), Multiseptospora (Pleosporales genera incertae cedis), Neogaeumannomyces (Magnaporthaceae), Palmiascoma (Bambusicolaceae), Paralecia (Squamarinaceae) and Sarimanas (Melanommataceae). The newly described species are the Ascomycota Aliquandostipite manochii, Allophaeosphaeria dactylidis, A. muriformia, Alternaria cesenica, Amphibambusa bambusicola, Amphisphaeria sorbi, Annulohypoxylon thailandicum, Atrotorquata spartii, Brunneomycosphaerella laburni, Byssosphaeria musae, Camarosporium aborescentis, C. aureum, C. frutexensis, Chaetocapnodium siamensis, Chaetothyrium agathis, Colletotrichum sedi, Conicomyces pseudotransvaalensis, Cytospora berberidis, C. sibiraeae, Diaporthe thunbergiicola, Diatrype palmicola, Dictyosporium aquaticum, D. meiosporum, D. thailandicum, Didymella cirsii, Dinemasporium nelloi, Flammeascoma bambusae, Kalmusia italica, K. spartii, Keissleriella sparticola, Lauriomyces synnematicus, Leptosphaeria ebuli, Lophiostoma pseudodictyosporium, L. ravennicum, Lophiotrema eburnoides, Montagnula graminicola, Multiseptospora thailandica, Myrothecium macrosporum, Natantispora unipolaris, Neogaeumannomyces bambusicola, Neosetophoma clematidis, N. italica, Oxydothis atypica, Palmiascoma gregariascomum, Paraconiothyrium nelloi, P. thysanolaenae, Paradictyoarthrinium tectonicola, Paralecia pratorum, Paraphaeosphaeria spartii, Pestalotiopsis digitalis, P. dracontomelon, P. italiana, Phaeoisaria pseudoclematidis, Phragmocapnias philippinensis, Pseudocamarosporium cotinae, Pseudocercospora tamarindi, Pseudotrichia rubriostiolata, P. thailandica, Psiloglonium multiseptatum, Saagaromyces mangrovei, Sarimanas pseudofluviatile, S. shirakamiense, Tothia spartii, Trichomerium siamensis, Wojnowicia dactylidicola, W. dactylidis and W. lonicerae. The Basidiomycota Agaricus flavicentrus, A. hanthanaensis, A. parvibicolor, A. sodalis, Cantharellus luteostipitatus, Lactarius atrobrunneus, L. politus, Phylloporia dependens and Russula cortinarioides are also introduced. Epitypifications or reference specimens are designated for Hapalocystis berkeleyi, Meliola tamarindi, Pallidocercospora acaciigena, Phaeosphaeria musae, Plenodomus agnitus, Psiloglonium colihuae, P. sasicola and Zasmidium musae while notes and/or new sequence data are provided for Annulohypoxylon leptascum, A. nitens, A. stygium, Biscogniauxia marginata, Fasciatispora nypae, Hypoxylon fendleri, H. monticulosum, Leptosphaeria doliolum, Microsphaeropsis olivacea, Neomicrothyrium, Paraleptosphaeria nitschkei, Phoma medicaginis and Saccotheciaceae. A full description of each species is provided with light micrographs (or drawings). Molecular data is provided for 90 taxa and used to generate phylogenetic trees to establish a natural classification for species.

Revision and phylogeny of Leptosphaeriaceae

Leptosphaeriaceae is a family in the order Pleosporales comprising economically important plant pathogens. Species may also be endophytes or saprobes on various host plants. In recent classifications Alternariaster, Leptosphaeria, Neophaeosphaeria, Paraleptosphaeria, Heterospora, Subplenodomus and Plenodomus were included in the family. The taxonomy of genera and species in Leptosphaeriaceae has been problematic due to the lack of understanding of the importance of morphological characters used to distinguish taxa, as well as the lack of reference strains. In order to establish evolutionary relationships and to provide a backbone tree for Leptosphaeria and allied genera, we sequenced the 18S nrDNA, 28S nrDNA, ITS, RPB2, TEF and ACT gene regions of Leptosphaeriaceae species and analysed this data. Multi-locus phylogenies together with morphology robustly support the monophyletic nature of Leptosphaeriaceae among the other families in Pleosporales, and the inclusion of the genera Alternariaster, Heterospora, Leptosphaeria, Paraleptosphaeria, Sphaerellopsis, Subplenodomus, Plenodomus and three novel genera Alloleptosphaeria, Neoleptosphaeria and Pseudoleptosphaeria. Five new species, Alternariaster centaureae-diffusae, Leptosphaeria cichorium, Paraleptosphaeria rubi, Plenodomus guttulatus and P. salviae are introduced. An account of sexual morph of Alternariaster centaureae-diffusae is provided, and the sexual morph of Leptosphaeria doliolum is re-described and illustrated using modern concepts from fresh collections. A novel family Neophaeosphaeriaceae is established to accommodate the genus Neophaeosphaeria and its species.

Fungal diversity notes 709???839: taxonomic and phylogenetic contributions to fungal taxa with an emphasis on fungi on Rosaceae

AbstractThis paper is the seventh in the Fungal Diversity Notes series, where 131 taxa accommodated in 28 families are mainly described from Rosa (Rosaceae) and a few other hosts. Novel fungal taxa are described in the present study, including 17 new genera, 93 new species, four combinations, a sexual record for a species and new host records for 16 species. Bhatiellae, Cycasicola, Dactylidina, Embarria, Hawksworthiana, Italica, Melanocucurbitaria, Melanodiplodia, Monoseptella, Uzbekistanica, Neoconiothyrium, Neopaucispora, Pararoussoella, Paraxylaria, Marjia, Sporormurispora and Xenomassariosphaeria are introduced as new ascomycete genera. We also introduce the new species Absidia jindoensis, Alternaria doliconidium, A. hampshirensis, Angustimassarina rosarum, Astragalicola vasilyevae, Backusella locustae, Bartalinia rosicola, Bhatiellae rosae, Broomella rosae, Castanediella camelliae, Coelodictyosporium rosarum, Comoclathris rosae, C. rosarum, Comoclathris rosigena, Coniochaeta baysunika, C. rosae, Cycasicola goaensis, Dactylidina shoemakeri, Dematiopleospora donetzica, D. rosicola, D. salsolae, Diaporthe rosae, D. rosicola, Endoconidioma rosae-hissaricae, Epicoccum rosae, Hawksworthiana clematidicola, H. lonicerae, Italica achilleae, Keissleriella phragmiticola, K. rosacearum, K. rosae, K. rosarum, Lophiostoma rosae, Marjia tianschanica, M. uzbekistanica, Melanocucurbitaria uzbekistanica, Melanodiplodia tianschanica, Monoseptella rosae, Mucor fluvius, Muriformistrickeria rosae, Murilentithecium rosae, Neoascochyta rosicola, Neoconiothyrium rosae, Neopaucispora rosaecae, Neosetophoma rosarum, N. rosae, N. rosigena, Neostagonospora artemisiae, Ophiobolus artemisiicola, Paraconiothyrium rosae, Paraphaeosphaeria rosae, P. rosicola, Pararoussoella rosarum, Parathyridaria rosae, Paraxylaria rosacearum, Penicillium acidum, P. aquaticum, Phragmocamarosporium rosae, Pleospora rosae, P. rosae-caninae, Poaceicola agrostina, P. arundinicola, P. rosae, Populocrescentia ammophilae, P. rosae, Pseudocamarosporium pteleae, P. ulmi-minoris, Pseudocercospora rosae, Pseudopithomyces rosae, Pseudostrickeria rosae, Sclerostagonospora lathyri, S. rosae, S. rosicola, Seimatosporium rosigenum, S. rosicola, Seiridium rosarum, Setoseptoria arundelensis, S. englandensis, S. lulworthcovensis, Sigarispora agrostidis, S. caryophyllacearum, S. junci, S. medicaginicola, S. rosicola, S. scrophulariae, S. thymi, Sporormurispora atraphaxidis, S. pruni, Suttonomyces rosae, Umbelopsis sinsidoensis, Uzbekistanica rosae-hissaricae, U. yakutkhanika, Wojnowicia rosicola, Xenomassariosphaeria rosae. New host records are provided for Amandinea punctata, Angustimassarina quercicola, Diaporthe rhusicola, D. eres, D. foeniculina, D. rudis, Diplodia seriata, Dothiorella iberica, Lasiodiplodia theobromae, Lecidella elaeochroma, Muriformistrickeria rubi, Neofusicoccum australe, Paraphaeosphaeria michotii, Pleurophoma pleurospora, Sigarispora caulium and Teichospora rubriostiolata. The new combinations are Dactylidina dactylidis (=Allophaeosphaeria dactylidis), Embarria clematidis (=Allophaeosphaeria clematidis), Hawksworthiana alliariae (=Dematiopleospora alliariae) and Italica luzulae (=Dematiopleospora luzulae). This study also provides some insights into the diversity of fungi on Rosa species and especially those on Rosa spines that resulted in the characterisation of eight new genera, 45 new species, and nine new host records. We also collected taxa from Rosa stems and there was 31% (20/65) overlap with taxa found on stems with that on spines. Because of the limited and non-targeted sampling for comparison with collections from spines and stems of the same host and location, it is not possible to say that the fungi on spines of Rosa differ from those on stems. The study however, does illustrate how spines are interesting substrates with high fungal biodiversity. This may be because of their hard structure resulting in slow decay and hence are suitable substrates leading to fungal colonisation. All data presented herein are based on morphological examination of specimens, coupled with phylogenetic sequence data to better integrate taxa into appropriate taxonomic ranks and infer their evolutionary relationships.

Additions to Sporormiaceae: Introducing Two Novel Genera, Sparticola and Forliomyces, from Spartium

Abstract Members of the family Sporormiaceae are mostly saprobic on dung, but sometimes occur on other substrates, including plant debris, soil and wood. They have also been isolated as endophytes. The taxonomy and classification of the family is based on a small number of morphological and ecological characters. Several taxa are easily confused by their shared morphological features, and the relationships between genera are inadequately recognized and in need of critical study. In recent treatments, the genera Chaetopreussia, Pleophragmia, Preussia, Sporormia, Sporomiella, Spororminula and Westerdykella were included in the family. During our survey on various hosts and habitats in Italy we obtained several interesting ascomycetous fungi from Spartium junceum. In this paper we introduce Sparticola and Forliomyces gen. nov. with three new species, namely Forliomyces uniseptata, Sparticola forlicesenae and Sparticola junci in the family Sporormiaceae based on multi-locus phylogeny together with morphology. Illustrated accounts are provided for the new taxa, which are compared with morphologically related taxa. Further, we provide an illustrated account of the type of Massariosphaeria triseptata and synonymize it under Sparticola.

Towards a natural classification of Ophiobolus and ophiobolus-like taxa; introducing three novel genera Ophiobolopsis, Paraophiobolus and Pseudoophiobolus in Phaeosphaeriaceae (Pleosporales)

Ophiobolus is a large genus of Phaeosphaeriaceae comprising more than 350 possible species, most of which are saprobes on herbaceous plants in Europe and North America. Ophiobolus species are polyphyletic and the type of Ophiobolus is not represented in GenBank. Therefore, an increased taxon sampling of ophiobolus-like taxa and epitypification of the type species, O. disseminans is reported. Multigene phylogenetic analyses of combined LSU, SSU, TEF1-α and ITS sequence data position O. disseminans in a sister clade with O. ponticus and several Entodesmium species in Phaeosphaeriaceae with high support. Therefore, Entodesmium is synonymized under Ophiobolus. Premilcurensis with it type species, P. senecionis also clusters within the Ophiobolus clade and is synonymized under Ophiobolus. Ophiobolus rossicus sp. nov. is introduced and a reference specimen is designated for O. ponticus. Other ophiobolus-like taxa (Ophiobolus sensu lato) can be distinguished as three main groups, which are introduced as new genera. Ophiobolopsis is introduced to accommodate the new species, Ophiobolopsis italica. The new genus Paraophiobolus is introduced to accommodate P. arundinis sp. nov. and P. plantaginis comb. nov. This genus is characterized by hyaline to pale yellowish ascospores, some green-yellowish at maturity, with a swollen cell, terminal appendages and ascospores not separating into part spores. Pseudoophiobolus gen. nov. is introduced to accommodate six new species and two new combinations, viz. Ps. achilleae, Ps. erythrosporus, Ps. galii, Ps. italicus, Ps. mathieui, Ps. rosae, Ps. subhyalinisporus and Ps. urticicola. Pseudoophiobolus is characterized by subhyaline to pale yellowish or yellowish ascospores, with a swollen cell, lack of terminal appendages and ascospores that do not separate into part spores and is related to Nodulosphaeria. An updated tree for Phaeosphaeriaceae based on multigene analysis is also provided.

Two novel species of Neoaquastroma (Parabambusicolaceae, Pleosporales) with their phoma-like asexual morphs

Abstract The monotypic genus Neoaquastroma (Parabambusicolaceae, Pleosporales) was introduced for a microfungus isolated from a collection of dried stems of a dicotyledonous plant in Thailand. In this paper, we introduce two novel species, N. bauhiniae and N. krabiense, in this genus. Their asexual morphs comprise conidiomata with aseptate and hyaline conidia. Neoaquastroma bauhiniae has ascomata, asci and ascospores that are smaller than those of N. krabiense. Descriptions and illustrations of N. bauhiniae and N. krabiense are provided and the two species compared with the type species of the genus, N. guttulatum. Evidence for the introduction of the new taxa is also provided from phylogenetic analysis of a combined dataset of partial LSU, SSU, ITS and tef1 sequence data. The phylogenetic analysis revealed a distinct lineage for N. bauhiniae and N. krabiense within the family Parabambusicolaceae.

Biofilm Inhibitory Abscisic Acid Derivatives from the Plant-Associated Dothideomycete Fungus, Roussoella sp.

Roussoella species are well recorded from both monocotyledons and dicotyledons. As part of a research program to discover biologically active compounds from plant-associated Dothideomycetes in Thailand, the strain Roussoella sp. (MFLUCC 17-2059), which represents an undescribed species, was isolated from Clematis subumbellata Kurz, fermented in yeast-malt medium and explored for its secondary metabolite production. Bioassay-guided fractionation of the crude extract yielded the new abscisic acid derivative, roussoellenic acid (1), along with pestabacillin B (2), a related congener, and the cyclodipeptide, cyclo(S-Pro-S-Ile) (3). The structure of 1 was determined by 2D NMR spectroscopy and HR-ESIMS data analysis. Compounds 1 and 2 showed inhibitory activity on biofilm formation by Staphylococcus aureus. The biofilm formation of S. aureus was reduced to 34% at 16 µg/mL by roussoellenic acid (1), while pestabacillin B (2) only showed 36% inhibition at 256 µg/mL. In addition, compound 1 also had weak cytotoxic effects on L929 murine fibroblasts and human KB3-1 cancer cells.