Daeho Kim

A Surface Coordination Network Based on Substrate‐Derived Metal Adatoms with Local Charge Excess

In the quest for increased control and tuneability of organic patterns at metal surfaces, more and more systems emerge that rely upon coordination of metal adatoms by organic ligands using endgroups such as carbonitriles, amines, and carboxylic acids. Such systems promise great flexibility in the size and geometry of the surface pattern through choice of the ligand shape, the number and arrangement of ligating endgroups, and the nature of the metal centers. Planar (trigonal or square) arrangements of ligands around metal centers occur most commonly as a result of attractive interactions of the ligands with the substrate. In contrast, in the solution phase planar, and in particular trigonal planar, arrangements are quite rare and generally require ligands whose nature (for example bidentate, pincer shape) forces planarity. Given the relatively short history of the field of surface coordination chemistry, compared to its solution-phase counterpart, it is of great interest to know which information can be gleaned from the latter to predict that for the former. Aspects of coordination chemistry at surfaces that have attracted very little attention to date are the effective oxidation state of the metal atom, which is much more straightforward to define in the solution phase, and the response of the coordination center to the presence of ligands at a surface. This study details an effort at gaining some insight into these two aspects, using a coordination system which is particularly facile to prepare, as it relies on substrate atoms as coordination centers, rather than requiring their separate deposition. In particular, this study describes the formation of a hexagonal network of 9,10-anthracenedicarbonitrile (DCA) on Cu(111) by titration of a nearly square molecular arrangement with copper atoms released from the substrate by annealing. We apply a combination of experimental and theoretical methods and juxtapose their results with the molecular patterns formed in the absence of a substrate. Individual DCA molecules adsorb flat onto Cu(111) with the anthracene moiety parallel to the high-symmetry direction of the substrate. Figure 1 shows an STM image of DCA

Toward the growth of an aligned single-layer MoS2 film.

Molybdenum disulfide (molybdenite) monolayer islands and flakes have been grown on a copper surface at comparatively low temperature and mild conditions through sulfur loading of the substrate using thiophenol (benzenethiol) followed by the evaporation of Mo atoms and annealing. The MoS(2) islands show a regular Moiré pattern in scanning tunneling microscopy, attesting to their atomic ordering and high quality. They are all aligned with the substrate high-symmetry directions providing for rotational-domain-free monolayer growth.

Do Two-Dimensional “Noble Gas Atoms” Produce Molecular Honeycombs at a Metal Surface?

Anthraquinone self-assembles on Cu(111) into a giant honeycomb network with exactly three molecules on each side. Here we propose that the exceptional degree of order achieved in this system can be explained as a consequence of the confinement of substrate electrons in the pores, with the pore size tailored so that the confined electrons can adopt a noble-gas-like two-dimensional quasi-atom configuration with two filled shells. Formation of identical pores in a related adsorption system (at different overall periodicity due to the different molecule size) corroborates this concept. A combination of photoemission spectroscopy with density functional theory computations (including van der Waals interactions) of adsorbate-substrate interactions allows quantum mechanical modeling of the spectra of the resultant quasi-atoms and their energetics.

Power of Confinement: Adsorbate Dynamics on Nanometer-Scale Exposed Facets

The diffusion and arrangements of CO adsorbates within nanometer-scale pores on a copper surface are investigated by low-temperature scanning tunneling microscopy. In contrast to extended terraces, confinement stabilizes dislocation lines that expose more than one-fourth of the adsorbate population to potentially more reactive adsorption configurations. Confinement allows correlation between adsorbate diffusivity and the number of adsorbates in the pore. A marked increase is found that coincides with the absence of dense films on the exposed facets. In combination, we find that in confinement CO molecules are much more likely to be at adsorption sites that allow lateral access, in contrast to the dense and uniform films on extended terraces.

H-atom position as pattern-determining factor in arenethiol films.

The evolution of a low coverage of benzenethiol molecules on Cu(111) during annealing shows the prevalence of S...H hydrogen bonds involving hydrogen atoms in the ortho position. The row and pattern formation of (methylated) anthracenethiols indicates intermolecular interactions in which hydrogen atoms at the terminal position of the aromatic moiety dominate. In combination, this leads to the notion that pattern formation in classes of arenethiol molecules is each governed by optimization of the intermolecular interactions of the hydrogen atom at one particular position on the arene. This may provide a general guiding principle for the design of arenethiol films.

Coalescence of 3-phenyl-propynenitrile on Cu(111) into interlocking pinwheel chains.

3-phenyl-propynenitrile (PPN) adsorbs on Cu(111) in a hexagonal network of molecular trimers formed through intermolecular interaction of the cyano group of one molecule with the aromatic ring of its neighbor. Heptamers of trimers coalesce into interlocking pinwheel-shaped structures that, by percolating across islands of the original trimer coverage, create the appearance of gear chains. Density functional theory aids in identifying substrate stress associated with the chemisorption of PPNs acetylene group as the cause of this transition.

Steric blocking as a tool to control molecular film geometry at a metal surface.

The application of steric blocking in surface science is exemplified by the control of surface patterns through the selective methylation of pentacenetetrone. Pentacenetetrones interact (with one another) on Cu(111) via intermolecular hydrogen bonding involving the carbonyl oxygen and the adjacent hydrogen atoms. Steric blocking of the intermolecular interaction by the successive insertion of inert methyl groups at terminal locations transforms a dense molecular pattern first into isolated double rows and eventually into single rows in a highly predictable fashion. Density functional theory modeling reveals the underlying energetics.