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Featured researches published by Daniel J. Sobota.


Nature | 2008

Stream denitrification across biomes and its response to anthropogenic nitrate loading

Patrick J. Mulholland; Ashley M. Helton; Geoffrey C. Poole; Robert O. Hall; Stephen K. Hamilton; Bruce J. Peterson; Jennifer L. Tank; Linda R. Ashkenas; Lee W. Cooper; Clifford N. Dahm; Walter K. Dodds; Stuart E. G. Findlay; Stanley V. Gregory; Nancy B. Grimm; Sherri L. Johnson; William H. McDowell; Judy L. Meyer; H. Maurice Valett; Jackson R. Webster; Clay P. Arango; Jake J. Beaulieu; Melody J. Bernot; Amy J. Burgin; Chelsea L. Crenshaw; Laura T. Johnson; B. R. Niederlehner; Jonathan M. O'Brien; Jody D. Potter; Richard W. Sheibley; Daniel J. Sobota

Anthropogenic addition of bioavailable nitrogen to the biosphere is increasing and terrestrial ecosystems are becoming increasingly nitrogen-saturated, causing more bioavailable nitrogen to enter groundwater and surface waters. Large-scale nitrogen budgets show that an average of about 20–25 per cent of the nitrogen added to the biosphere is exported from rivers to the ocean or inland basins, indicating that substantial sinks for nitrogen must exist in the landscape. Streams and rivers may themselves be important sinks for bioavailable nitrogen owing to their hydrological connections with terrestrial systems, high rates of biological activity, and streambed sediment environments that favour microbial denitrification. Here we present data from nitrogen stable isotope tracer experiments across 72 streams and 8 regions representing several biomes. We show that total biotic uptake and denitrification of nitrate increase with stream nitrate concentration, but that the efficiency of biotic uptake and denitrification declines as concentration increases, reducing the proportion of in-stream nitrate that is removed from transport. Our data suggest that the total uptake of nitrate is related to ecosystem photosynthesis and that denitrification is related to ecosystem respiration. In addition, we use a stream network model to demonstrate that excess nitrate in streams elicits a disproportionate increase in the fraction of nitrate that is exported to receiving waters and reduces the relative role of small versus large streams as nitrate sinks.


Proceedings of the National Academy of Sciences of the United States of America | 2011

Nitrous oxide emission from denitrification in stream and river networks

Jake J. Beaulieu; Jennifer L. Tank; Stephen K. Hamilton; Wilfred M. Wollheim; Robert O. Hall; Patrick J. Mulholland; Bruce J. Peterson; Linda R. Ashkenas; Lee W. Cooper; Clifford N. Dahm; Walter K. Dodds; Nancy B. Grimm; Sherri L. Johnson; William H. McDowell; Geoffrey C. Poole; H. Maurice Valett; Clay P. Arango; Melody J. Bernot; Amy J. Burgin; Chelsea L. Crenshaw; Ashley M. Helton; Laura T. Johnson; Jonathan M. O'Brien; Jody D. Potter; Richard W. Sheibley; Daniel J. Sobota; Suzanne M. Thomas

Nitrous oxide (N2O) is a potent greenhouse gas that contributes to climate change and stratospheric ozone destruction. Anthropogenic nitrogen (N) loading to river networks is a potentially important source of N2O via microbial denitrification that converts N to N2O and dinitrogen (N2). The fraction of denitrified N that escapes as N2O rather than N2 (i.e., the N2O yield) is an important determinant of how much N2O is produced by river networks, but little is known about the N2O yield in flowing waters. Here, we present the results of whole-stream 15N-tracer additions conducted in 72 headwater streams draining multiple land-use types across the United States. We found that stream denitrification produces N2O at rates that increase with stream water nitrate (NO3−) concentrations, but that <1% of denitrified N is converted to N2O. Unlike some previous studies, we found no relationship between the N2O yield and stream water NO3−. We suggest that increased stream NO3− loading stimulates denitrification and concomitant N2O production, but does not increase the N2O yield. In our study, most streams were sources of N2O to the atmosphere and the highest emission rates were observed in streams draining urban basins. Using a global river network model, we estimate that microbial N transformations (e.g., denitrification and nitrification) convert at least 0.68 Tg·y−1 of anthropogenic N inputs to N2O in river networks, equivalent to 10% of the global anthropogenic N2O emission rate. This estimate of stream and river N2O emissions is three times greater than estimated by the Intergovernmental Panel on Climate Change.


Journal of Environmental Quality | 2011

Linking dissolved and particulate phosphorus export in rivers draining California's Central Valley with anthropogenic sources at the regional scale.

Daniel J. Sobota; John A. Harrison; Randy A. Dahlgren

Pollution of water resources by phosphorus (P) is a critical issue in regions with agricultural and urban development. In this study, we estimated P inputs from agricultural and urban sources in 24 catchments draining to the Central Valley in California and compared them with measured river P export to investigate hydrologic and anthropogenic factors affecting regional P retention and export. Using spatially explicit information on fertilizer use, livestock population, agricultural production, and human population, we calculated that net surface balances for anthropogenic P ranged from -12 to 648 kg P km yr in the early 2000s. Inorganic P fertilizer and manure P comprised the largest fraction of total input for all but two catchments. From 2000 to 2003, a median of 7% (range, -287 to 88%) of net annual anthropogenic P input was exported as total P (TP). Yields (kg P km yr) of dissolved inorganic P (DIP), dissolved organic P, particulate P, and TP were not significantly related to catchment-level, per area anthropogenic P input. However, there were significant relationships between mean annual P concentrations and P input from inorganic fertilizers and manure due to the concentration of agricultural land near catchment mouths and regional variation in runoff. Catchment-level P fertilizer and manure inputs explained 4 to 23% more variance in mean annual DIP and TP concentrations than percent of catchment area in agriculture. This study suggests that spatially explicit estimates of anthropogenic P input can help identify sources of multiple forms of P exported in rivers at management-relevant spatial scales.


Freshwater Science | 2014

The Lotic Intersite Nitrogen Experiments: an example of successful ecological research collaboration

Walter K. Dodds; Jackson R. Webster; Chelsea L. Crenshaw; Ashley M. Helton; Jonathan M. O'Brien; Eugènia Martí; Anne E. Hershey; Jennifer L. Tank; Amy J. Burgin; Nancy B. Grimm; Stephen K. Hamilton; Daniel J. Sobota; Geoffrey C. Poole; Jake J. Beaulieu; Laura T. Johnson; Linda R. Ashkenas; Robert O. Hall; Spencer Johnson; Wilfred M. Wollheim; William B. Bowden

Collaboration is an essential skill for modern ecologists because it brings together diverse expertise, viewpoints, and study systems. The Lotic Intersite Nitrogen eXperiments (LINX I and II), a 17-y research endeavor involving scores of early- to late-career stream ecologists, is an example of the benefits, challenges, and approaches of successful collaborative research in ecology. The scientific success of LINX reflected tangible attributes including clear scientific goals (hypothesis-driven research), coordinated research methods, a team of cooperative scientists, excellent leadership, extensive communication, and a philosophy of respect for input from all collaborators. Intangible aspects of the collaboration included camaraderie and strong team chemistry. LINX further benefited from being part of a discipline in which collaboration is a tradition, clear data-sharing and authorship guidelines, an approach that melded field experiments and modeling, and a shared collaborative goal in the form of a universal commitment to see the project and resulting data products through to completion.Abstract: Collaboration is an essential skill for modern ecologists because it brings together diverse expertise, viewpoints, and study systems. The Lotic Intersite Nitrogen eXperiments (LINX I and II), a 17-y research endeavor involving scores of early- to late-career stream ecologists, is an example of the benefits, challenges, and approaches of successful collaborative research in ecology. The scientific success of LINX reflected tangible attributes including clear scientific goals (hypothesis-driven research), coordinated research methods, a team of cooperative scientists, excellent leadership, extensive communication, and a philosophy of respect for input from all collaborators. Intangible aspects of the collaboration included camaraderie and strong team chemistry. LINX further benefited from being part of a discipline in which collaboration is a tradition, clear data-sharing and authorship guidelines, an approach that melded field experiments and modeling, and a shared collaborative goal in the form of a universal commitment to see the project and resulting data products through to completion.


Freshwater Biology | 2010

Inter-regional comparison of land-use effects on stream metabolism

Melody J. Bernot; Daniel J. Sobota; Robert O. Hall; Patrick J. Mulholland; Walter K. Dodds; Jackson R. Webster; Jennifer L. Tank; Linda R. Ashkenas; Lee W. Cooper; Clifford N. Dahm; Stanley V. Gregory; Nancy B. Grimm; Stephen K. Hamilton; Sherri L. Johnson; William H. McDowell; Judith L. Meyer; Bruce J. Peterson; Geoffrey C. Poole; H. Maurice Valett; Clay P. Arango; Jake J. Beaulieu; Amy J. Burgin; Chelsea L. Crenshaw; Ashley M. Helton; Laura T. Johnson; Jeff Merriam; B. R. Niederlehner; Jonathan M. O'Brien; Jody D. Potter; Richard W. Sheibley


Limnology and Oceanography | 2009

Nitrate removal in stream ecosystems measured by 15N addition experiments: Denitrification

Patrick J. Mulholland; Robert O. Hall; Daniel J. Sobota; Walter K. Dodds; Stuart E. G. Findlay; Nancy B. Grimm; Stephen K. Hamilton; William H. McDowell; Jonathan M. O'Brien; Jennifer L. Tank; Linda R. Ashkenas; Lee W. Cooper; Clifford N. Dahm; Stanley V. Gregory; Sherri L. Johnson; Judy L. Meyer; Bruce J. Peterson; Geoffrey C. Poole; H. Maurice Valett; Jackson R. Webster; Clay P. Arango; Jake J. Beaulieu; Melody J. Bernot; Amy J. Burgin; Chelsea L. Crenshaw; Ashley M. Helton; Laura T. Johnson; B. R. Niederlehner; Jody D. Potter; Richard W. Sheibley


Limnology and Oceanography | 2009

Nitrate removal in stream ecosystems measured by 15N addition experiments: Total uptake

Robert O. Hall; Jennifer L. Tank; Daniel J. Sobota; Patrick J. Mulholland; Jonathan M. O'Brien; Walter K. Dodds; Jackson R. Webster; H. Maurice Valett; Geoffrey C. Poole; Bruce J. Peterson; Judy L. Meyer; William H. McDowell; Sherri L. Johnson; Stephen K. Hamilton; Nancy B. Grimm; Stanley V. Gregory; Clifford N. Dahm; Lee W. Cooper; Linda R. Ashkenas; Suzanne M. Thomas; Richard W. Sheibley; Jody D. Potter; B. R. Niederlehner; Laura T. Johnson; Ashley M. Helton; Chelsea Crenshaw; Amy J. Burgin; Melody J. Bernot; Jake J. Beaulieu; Clay P. Arangob


Biogeochemistry | 2011

Cross-stream comparison of substrate-specific denitrification potential

Stuart E. G. Findlay; Patrick J. Mulholland; Stephen K. Hamilton; Jennifer L. Tank; Melody J. Bernot; Amy J. Burgin; Chelsea L. Crenshaw; Walter K. Dodds; Nancy B. Grimm; William H. McDowell; Jody D. Potter; Daniel J. Sobota


Ecosystems | 2012

A Stable Isotope Tracer Study of the Influences of Adjacent Land Use and Riparian Condition on Fates of Nitrate in Streams

Daniel J. Sobota; Sherri L. Johnson; Stan V. Gregory; Linda R. Ashkenas


Canadian Journal of Forest Research | 2006

Riparian tree fall directionality and modeling large wood recruitment to streams

Daniel J. Sobota; Stanley V. Gregory; John Van Sickle

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Nancy B. Grimm

Arizona State University

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Jake J. Beaulieu

United States Environmental Protection Agency

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Jody D. Potter

University of New Hampshire

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