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Featured researches published by Douwe Zuidema.


Journal of Virology | 2002

Furin Is Involved in Baculovirus Envelope Fusion Protein Activation

Marcel Westenberg; Hualin Wang; Wilfred F. J. IJkel; Rob Goldbach; Just M. Vlak; Douwe Zuidema

ABSTRACT The Spodoptera exigua multicapsid nucleopolyhedrovirus (SeMNPV) Se8 gene was recently shown to encode the viral envelope fusion (F) protein. A 60-kDa C-terminal subunit (F1) of the 76-kDa primary translation product of this gene was found to be the major envelope protein of SeMNPV budded virus (BV) (W. F. J. IJkel, M. Westenberg, R. W. Goldbach, G. W. Blissard, J. M. Vlak, and D. Zuidema, Virology 275:30–41, 2000). A specific inhibitor was used to show that furin is involved in cleavage of the precursor envelope fusion (F0) protein. BV produced in the presence of the inhibitor possesses the uncleaved F0 protein, while an F protein with a mutation in the furin cleavage site was translocated to the plasma membrane but lost its fusogenic activity. These results indicate that cleavage of F0 is required to activate the SeMNPV F protein and is necessary for BV infectivity. Specific antibodies against F1 and against the putative N terminus (F2) of the primary translation product were used to show that the F protein is BV specific and that BVs contain both the 60- (F1) and 21-kDa (F2) cleavage products. In nonreducing sodium dodecyl sulfate-polyacrylamide gel electrophoresis both subunits migrate as a single 80-kDa protein, indicating that the subunits remain associated by a disulfide linkage. In addition, the presence of the F protein predominately as a monomer suggests that disulfide links are not involved in oligomerization. Thus, the envelope fusion protein from group II nucleopolyhedroviruses of baculoviruses has properties similar to those of proteins from a number of vertebrate viruses.


Journal of Virology | 2004

Functional Analysis of the Putative Fusion Domain of the Baculovirus Envelope Fusion Protein F

Marcel Westenberg; Frank Veenman; Els C. Roode; Rob Goldbach; Just M. Vlak; Douwe Zuidema

ABSTRACT Group II nucleopolyhedroviruses (NPVs), e.g., Spodoptera exigua MNPV, lack a GP64-like protein that is present in group I NPVs but have an unrelated envelope fusion protein named F. In contrast to GP64, the F protein has to be activated by a posttranslational cleavage mechanism to become fusogenic. In several vertebrate viral fusion proteins, the cleavage activation generates a new N terminus which forms the so-called fusion peptide. This fusion peptide inserts in the cellular membrane, thereby facilitating apposition of the viral and cellular membrane upon sequential conformational changes of the fusion protein. A similar peptide has been identified in NPV F proteins at the N terminus of the large membrane-anchored subunit F1. The role of individual amino acids in this putative fusion peptide on viral infectivity and propagation was studied by mutagenesis. Mutant F proteins with single amino acid changes as well as an F protein with a deleted putative fusion peptide were introduced in gp64-null Autographa californica MNPV budded viruses (BVs). None of the mutations analyzed had an major effect on the processing and incorporation of F proteins in the envelope of BVs. Only two mutants, one with a substitution for a hydrophobic residue (F152R) and one with a deleted putative fusion peptide, were completely unable to rescue the gp64-null mutant. Several nonconservative substitutions for other hydrophobic residues and the conserved lysine residue had only an effect on viral infectivity. In contrast to what was expected from vertebrate virus fusion peptides, alanine substitutions for glycines did not show any effect.


Virology | 1983

Removal of the N-terminal part of alfalfa mosaic virus coat protein interferes with the specific binding to RNA 1 and genome activation

Douwe Zuidema; Marti F.A. Bierhuizen; E.M.J. Jaspars

Trypsinized coat protein of alfalfa mosaic virus lacking 25 amino acids at its N terminus still has the capability to form complexes with RNA which are detectable by sedimentation in sucrose gradients. However, it does not protect specific sites on the RNA against degradation by ribonuclease, as the native coat protein does (D. Zuidema, M. F. A. Bierhuizen, B. J. C. Cornelissen, J. F. Bol, and E. M. J. Jaspars (1983) Virology 125, 361-369.). The trypsinized coat protein has lost the capacity of the native coat protein to make the genome RNAs of alfalfa mosaic virus infectious or to interfere with the infectivity brought about by the native coat protein. These findings suggest that genome activation occurs via binding of the N-terminal part of the coat protein to specific sites on the RNAs.


Journal of General Virology | 1997

Characterization of a putative Spodoptera exigua multicapsid nucleopolyhedrovirus helicase gene

Jacobus G.M. Heldens; Yi Liu; Douwe Zuidema; Rob Goldbach; Just M. Vlak

Putative baculovirus helicases have been implicated as playing an important role in viral DNA replication and host specificity. The Spodoptera exigua multicapsid nucleopolyhedrovirus (SeMNPV) helicase is therefore of interest since the virus only infects the beet army worm. Sequence analysis of the SeMNPV lef5-p39 (mu 46.5-55.1) region, which is collinear with the 39K-lef5 area in Autographa californica MNPV (AcMNPV), revealed an open reading frame (ORF) of 3666 bp potentially encoding a protein with a molecular mass of 143 kDa. This protein had considerable amino acid sequence similarity (58%) to AcMNPV p143, including seven conserved motifs characteristic of helicases. In cultured insect cells, this SeMNPV ORF is expressed from 4 to 12 h postinfection and its major transcript of 4 kb starts 11 to 12 nt upstream of the putative translational initiation site (ATG). To study their possible role in the specificity of baculovirus DNA replication, the putative AcMNPV and SeMNPV helicase genes were tested for their ability to replicate homologous regions (hrs; putative origins of DNA replication) in a transient DNA replication assay in insect cells. All viral cis- and trans-acting factors were provided as plasmids using either Achr2 or Sehr1 as the DNA replication origin. SeMNPV p143 could not substitute for AcMNPV p143 in the transient assays supplemented with either hr. Similar results were obtained when the SeMNPV and AcMNPV ie1 genes were exchanged. None of the essential AcMNPV trans-acting factors could be complemented by SeMNPV infections to support DNA replication of hrs. These data suggest a specific interaction between baculovirus DNA replication factors to form the replisome and/or between the replisome and the origin of DNA replication.


Virology | 1985

Specificity of RNA and coat protein interaction in alfalfa mosaic virus and related viruses.

Douwe Zuidema; E.M.J. Jaspars

Well-defined coat protein binding sites were found to be present on the genomic RNAs of AlMV and TSV. In view of the regulatory importance of these sites in virus multiplication, the possibility that nonrelated proteins also were able to interact with these sites was investigated. The coat proteins of TSV, BMV, CMV, and SBMV recognize specific sites on AlMV RNA 1. The significance of these sites in virus multiplication is discussed. No specific binding sites were found with TMV coat protein or the nonviral proteins ovalbumin, myoglobin, and lysozyme. Moreover, the ability of AlMV coat protein to recognize specific sites on the heterologous RNAs of TSV, BMV, bacteriophage MS2, and Escherichia coli was tested. No specific sites were found with MS2-RNA. However, specific binding sites were found with BMV-RNA 3 and, unexpectedly, with E. coli 16 S ribosomal RNA. From these data it was concluded that binding of AlMV and TSV coat proteins to their genomic RNAs is a specific process. However, the binding of coat protein to BMV-RNAs and to ribosomal RNAs may result from secondary folding that may have been conserved for other purposes throughout evolution of the RNAs.


Journal of General Virology | 1994

Nucleotide sequence and genetic organization of a 7.3 kb region (map unit 47 to 52.5) of Autographa californica nuclear polyhedrosis virus fragment EcoRI-C

M. Kool; René Broer; Douwe Zuidema; Rob Goldbach; Just M. Vlak

The nucleotide sequence and genetic organization of a 7297 bp region within the EcoRI-C fragment of Autographa californica multiple nucleocapsid nuclear polyhedrosis virus (AcMNPV) are presented. Eight putative open reading frames were found and their respective amino acid sequences compared with a number of data libraries. ORF 1227 corresponded with gp41 and its predicted protein sequence was found to be 55 amino acids longer at its C terminus than reported previously. Moreover the main part of the ORF 1227 product, including the additional 55 amino acids, showed a high degree of homology with protein p40 of Helicoverpa zea single nucleocapsid nuclear polyhedrosis virus (HzSNPV). Three other ORFs in the analysed AcMNPV region showed homology with ORFs in the HzSNPV sequence, indicating that the general organization of this region is similar in both viruses. However one ORF found in the AcMNPV sequence was absent from the corresponding HzSNPV sequence.


Journal of Virological Methods | 1997

Generation of a p10-based baculovirus expression vector in yeast with infectivity for insect larvae and insect cells

Jacobus G.M. Heldens; Henri A. Kester; Douwe Zuidema; Just M. Vlak

A new, versatile baculovirus vector was developed for the generation of recombinants in the yeast Saccharomyces cerevisiae and for the expression of foreign proteins in both insect larvae and in insect cells. This vector is based on Autographa californica multiple nucleocapsid nucleopolyhedrovirus (AcMNPV) and exploits the 10-kDa protein promoter (p10) for the expression of the foreign gene. The p10 locus was used for the insertion of a yeast-selectable marker system (ARS-URA-URA3) and of a gene for screening and titration of recombinants in insect cells (beta-galactosidase). The polyhedron-positive phenotype of this vector is maintained allowing its use in insect larvae, by feeding polyhedra, and in insect cells, by infecting with budded virus. The generation of this baculovirus vector requires a single recombination step in yeast prior to infection of insect cells, but has the advantage over the vector designed previously (Patel et al., A new method for the isolation of recombinant baculovirus, Nucleic Acids Research 20 (1992) 97-104) that these vectors can also be used in insects.


Nucleic Acids Research | 1984

Complete nucleotide sequence of tobacco streak virus RNA 3

Ben J.C. Cornelissen; Henk Janssen; Douwe Zuidema; John F. Bol


Journal of General Virology | 1989

Nucleotide sequence of narcissus mosaic virus RNA.

Douwe Zuidema; Huub J. M. Linthorst; Marianne J. Huisman; Cees J. Asjes; John F. Bol


Virology | 1984

Comparative investigations on the coat protein binding sites of the genomic RNAs of alfalfa mosaic and tobacco streak viruses

Douwe Zuidema; E.M.J. Jaspars

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Just M. Vlak

Wageningen University and Research Centre

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Rob Goldbach

Wageningen University and Research Centre

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Bas Heinhuis

Wageningen University and Research Centre

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Els C. Roode

Wageningen University and Research Centre

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