Elena B. Nilsen

Paleoproductivity, nutrient burial, climate change and the carbon cycle in the western equatorial Atlantic across the Eocene/Oligocene boundary

Paleoproductivity, nutrient burial, and carbon cycling were investigated across the Eocene/Oligocene (E/O) boundary (begin to end; 36.9–32.7 Ma at ∼40 kyr resolution, timescale of Shackleton et al. [1999]) at Ocean Drilling Program Site 925 on the Ceara Rise in the western equatorial Atlantic (3040 m present water depth; 748.26–850.70 mbsf). Downcore bulk sediment records of biogenic barium, total reactive phosphorus, biogenic silica, and calcium carbonate are interpreted to represent export production, net nutrient burial, biogenic opal production, and inorganic carbon burial, respectively. The global positive excursion in δ13C subsequent to the E/O boundary is recorded at Site 925. Export production appears to have been externally forced by orbital parameters at eccentricity frequencies during the study interval, based on spectral analysis of the biogenic barium and reactive phosphorus records. Biogenic silica production or preservation increased after the Eocene/Oligocene boundary to a higher baseline, although overall productivity and nutrient burial did not increase, based on barium and reactive phosphorus records. Thus, although absolute production did not increase at this site, a shift in relative abundance of siliceous versus carbonate productivity may have resulted in a change in relative organic carbon burial. This may have contributed to the positive excursion in global oceanic δ13C subsequent to the Eocene/Oligocene boundary, although the silica maximum persists after the carbon isotope excursion ends.

Contaminants of legacy and emerging concern in largescale suckers (Catostomus macrocheilus) and the foodweb in the lower Columbia River, Oregon and Washington, USA

We investigated occurrence, transport pathways, and effects of polybrominated diphenyl ether (PBDE) flame retardants and other endocrine disrupting chemicals (EDCs) in aquatic media and the foodweb in the lower Columbia River. In 2009 and 2010, foodweb sampling at three sites along a gradient of contaminant exposure near Skamania (Washington), Columbia City (Oregon) and Longview (Washington) included water (via passive samplers), bed sediment, invertebrate biomass residing in sediment, a resident fish species (largescale suckers [Catostomus macrocheilus]), and eggs from osprey (Pandion haliaetus). This paper primarily reports fish tissue concentrations. In 2009, composites of fish brain, fillet, liver, stomach, and gonad tissues revealed that overall contaminant concentrations were highest in livers, followed by brain, stomach, gonad, and fillet. Concentrations of halogenated compounds in tissue samples from all three sites ranged from <1 to 400nanograms per gram of wet tissue. Several chemical classes, including PBDEs, organochlorine pesticides, and polychlorinated biphenyls (PCBs), were detected at all sites and in nearly all fish tissues sampled. In 2010, only fish livers were sampled and inter-site concentration differences were not as pronounced as in 2009. Chemical concentrations in sediments, fish tissues, and osprey eggs increased moving downstream from Skamania to the urbanized sites near Columbia City and Longview. Numerous organochlorine (OC) pesticides, both banned and currently used, and PBDEs, were present at each site in multiple media and concentrations exceeded environmental quality benchmarks in some cases. Frequently detected OC compounds included hexachlorobenzene, pentachloroanisole, dichlorodiphenyltrichloroethane (DDT) and its degradates, chlorpyrifos, and oxyfluorofen. Biomagnification of BDE47, 100, 153, and 154 occurred in largescale suckers and osprey eggs. Results support the hypothesis that contaminants in the environment lead to bioaccumulation and potential negative effects in multiple levels of the foodweb.

Spatial and temporal trends in occurrence of emerging and legacy contaminants in the Lower Columbia River 2008–2010

The Lower Columbia River in Oregon and Washington, USA, is an important resource for aquatic and terrestrial organisms, agriculture, and commerce. An 86-mile stretch of the river was sampled over a 3year period in order to determine the spatial and temporal trends in the occurrence and concentration of water-borne organic contaminants. Sampling occurred at 10 sites along this stretch and at 1 site on the Willamette River using the semipermeable membrane device (SPMD) and the polar organic chemical integrative sampler (POCIS) passive samplers. Contaminant profiles followed the predicted trends of lower numbers of detections and associated concentrations in the rural areas to higher numbers and concentrations at the more urbanized sites. Industrial chemicals, plasticizers, and PAHs were present at the highest concentrations. Differences in concentrations between sampling periods were related to the amount of rainfall during the sampling period. In general, water concentrations of wastewater-related contaminants decreased and concentrations of legacy contaminants slightly increased with increasing rainfall amounts.

Sedimentary organic biomarkers suggest detrimental effects of PAHs on estuarine microbial biomass during the 20th century in San Francisco Bay, CA, USA

Hydrocarbon contaminants are ubiquitous in urban aquatic ecosystems, and the ability of some microbial strains to degrade certain polycyclic aromatic hydrocarbons (PAHs) is well established. However, detrimental effects of petroleum hydrocarbon contamination on nondegrader microbial populations and photosynthetic organisms have not often been considered. In the current study, fatty acid methyl ester (FAME) biomarkers in the sediment record were used to assess historical impacts of petroleum contamination on microbial and/or algal biomass in South San Francisco Bay, CA, USA. Profiles of saturated, branched, and monounsaturated fatty acids had similar concentrations and patterns downcore. Total PAHs in a sediment core were on average greater than 20× higher above ∼200 cm than below, which corresponds roughly to the year 1900. Isomer ratios were consistent with a predominant petroleum combustion source for PAHs. Several individual PAHs exceeded sediment quality screening values. Negative correlations between petroleum contaminants and microbial and algal biomarkers - along with high trans/cis ratios of unsaturated FA, and principle component analysis of the PAH and fatty acid records - suggest a negative impacts of petroleum contamination, appearing early in the 20th century, on microbial and/or algal ecology at the site.

A survey of benthic sediment contaminants in reaches of the Columbia River Estuary based on channel sedimentation characteristics

While previous studies have documented contaminants in fish, sediments, water, and wildlife, few specifics are known about the spatial distribution of contaminants in the Columbia River Estuary (CRE). Our study goal was to characterize sediment contaminant detections and concentrations in reaches of the CRE that were concurrently being sampled to assess contaminants in water, invertebrates, fish, and osprey (Pandion haliaetus) eggs. Our objectives were to develop a survey design based on sedimentation characteristics and then assess whether sediment grain size, total organic carbon (TOC), and contaminant concentrations and detections varied between areas with different sedimentation characteristics. We used a sediment transport model to predict sedimentation characteristics of three 16km river reaches in the CRE. We then compartmentalized the modeled change in bed mass after a two week simulation to define sampling strata with depositional, stable, or erosional conditions. We collected and analyzed bottom sediments to assess whether substrate composition, organic matter composition, and contaminant concentrations and detections varied among strata within and between the reaches. We observed differences in grain size fractions between strata within and between reaches. We found that the fine sediment fraction was positively correlated with TOC. Contaminant concentrations were statistically different between depositional vs. erosional strata for the industrial compounds, personal care products and polycyclic aromatic hydrocarbons class (Indus-PCP-PAH). We also observed significant differences between strata in the number of detections of Indus-PCP-PAH (depositional vs. erosional; stable vs. erosional) and for the flame retardants, polychlorinated biphenyls, and pesticides class (depositional vs. erosional, depositional vs. stable). When we estimated mean contaminant concentrations by reach, we observed higher contaminant concentrations in the furthest downstream reach with a decreasing trend in the two upstream reaches. Contaminant survey designs that account for sedimentation characteristics could increase the probability that sampling is allocated to areas likely to be contaminated.

Health status of Largescale Sucker (Catostomus macrocheilus) collected along an organic contaminant gradient in the lower Columbia River, Oregon and Washington, USA

The health of Largescale Sucker (Catostomus macrocheilus) in the lower Columbia River (USA) was evaluated using morphometric and histopathological approaches, and its association with organic contaminants accumulated in liver was evaluated in males. Fish were sampled from three sites along a contaminant gradient. In 2009, body length and mass, condition factor, gonadosomatic index, and hematocrit were measured in males and females; liver and gonad tissue were collected from males for histological analyses; and organ composites were analyzed for contaminant content in males. In 2010, additional data were collected for males and females, including external fish condition assessment, histopathologies of spleen, kidney and gill and, for males, liver contaminant content. Multivariate analysis of variance indicated that biological traits in males, but not females, differed among sites in 2009 and 2010. Discriminant function analysis indicated that site-related differences among male populations were relatively small in 2009, but in 2010, when more variables were analyzed, males differed among sites in regards to kidney, spleen, and liver histopathologies and gill parasites. Kidney tubular hyperplasia, liver and spleen macrophage aggregations, and gill parasites were generally more severe in the downstream sites compared to the reference location. The contaminant content of male livers was also generally higher downstream, and the legacy pesticide hexachlorobenzene and flame retardants BDE-47 and BDE-154 were the primary drivers for site discrimination. However, bivariate correlations between biological variables and liver contaminants retained in the discriminant models failed to reveal associations between the two variable sets. In conclusion, whereas certain non-reproductive biological traits and liver contaminant contents of male Largescale Sucker differed according to an upstream-downstream gradient in the lower Columbia River, results from this study did not reveal the specific environmental factors responsible for the differences in health status among fish populations.

Reconnaissance of contaminants in larval Pacific lamprey (Entosphenus tridentatus) tissues and habitats in the Columbia River Basin, Oregon and Washington, USA

Pacific lampreys (Entosphenus tridentatus) have resided in the Columbia River Basin for millennia and have great ecological and cultural importance. The role of habitat contamination in the recent decline of the species has rarely been studied and was the main objective of this effort. A wide range of contaminants (115 analytes) was measured in sediments and tissues at 27 sites across a large geographic area of diverse land use. This is the largest dataset of contaminants in habitats and tissues of Pacific lamprey in North America and the first study to compare contaminant bioburden during the larval life stage and the anadromous, adult portion of the life cycle. Bioaccumulation of pesticides, flame retardants, and mercury was observed at many sites. Based on available data, contaminants are accumulating in larval Pacific lamprey at levels that are likely detrimental to organism health and may be contributing to the decline of the species.

Factors Influencing the Biogeochemistry of Sedimentary Carbon and Phosphorus in the Sacramento-San Joaquin Delta

This study characterizes organic carbon (Corganic) and phosphorus (P) geochemistry in surface sediments of the Sacramento-San Joaquin Delta, California. Sediment cores were collected from five sites on a sample transect from the edge of the San Francisco Bay eastward to the freshwater Consumnes River. The top 8 cm of each core were analyzed (in 1-cm intervals) for Corganic, four P fractions, and redox-sensitive trace metals (uranium and manganese). Sedimentary Corganic concentrations and Corganic: P ratios, decreased, while reactive P concentrations increased moving inland in the Delta. The fraction of total P represented by organic P increased inland, while that of authigenic P was higher bayward than inland reflecting increased diagenetic alteration of organic matter toward the bayward end of the transect. The redox indicator metals are consistent with decreasing sedimentary suboxia inland. The distribution of P fractions and C:P ratios, reflect the presence of relatively labile organic matter in upstream surface sediments. Sediment C and P geochemistry is influenced by site-specific particulate organic matter sources, the sorptive power of the sedimentary material present, physical forcing, and early diagenetic transformations presumably driven by Corganic oxidation.

Foodweb transfer, sediment transport, and biological impacts of emerging and legacy organic contaminants in the lower Columbia River, Oregon and Washington, USA: USGS Contaminants and Habitat (ConHab) Project

Science of the Total Environment 484 (2014) 319–321 Contents lists available at ScienceDirect Science of the Total Environment journal homepage: www.elsevier.com/locate/scitotenv Introduction Foodweb transfer, sediment transport, and biological impacts of emerging and legacy organic contaminants in the lower Columbia River, Oregon and Washington, USA: USGS Contaminants and Habitat (ConHab) Project The effects of chemicals of emerging and of legacy concern—including their quantities, spatial patterns, transfer, and accumulation—on food- webs in large aquatic ecosystems are little understood. As such, the Columbia River Contaminants and Habitat Characterization (ConHab) Project, an interdisciplinary study, investigated transport pathways, chemical fates and effects of polybrominated diphenyl ether (PBDE) flame retardants and other endocrine disrupting chemicals (EDCs) in water, sediments, and the foodweb in the lower Columbia River, Oregon and Washington, USA. The ConHab project was a collaboration of 13 principal investigators from seven US states. The approach included interdisciplinary technol- ogies and strategies, such as passive sampling, novel analytical chemis- try methods, endocrine and reproductive biomarker development and use, gene expression microarray development and use, and coupling geochemical data to habitat characteristics and hydrodynamic and sediment transport modeling. The Columbia River drains roughly 670,000 square kilometers of the Pacific Northwest of the United States and flows more than 1950 kilo- meters from its headwaters in the Canadian Rockies of British Columbia, across the State of Washington, and along the border of Oregon and Washington to its mouth at the Pacific Ocean. The system provides critical habitat for 13 stocks of threatened and endangered salmonid species and numerous resident fish. Aquatic biota using or residing in the lower Columbia River are exposed to a variety of environmental contaminants from numerous sources, including municipal and indus- trial permitted discharges, atmospheric deposition, urban and industrial nonpoint source pollution, accidental spills of hydrocarbons and haz- ardous materials, and runoff from agricultural and forested areas as Fig. 1. Map of the region with inset of the study area. Foodweb sampling areas are shaded and labeled: Skamania, Columbia City, and Longview. (Map created by Jill Hardiman, USGS, Western Fisheries Research Center, Cook, Washington, USA). 0048-9697/

Spatial and Temporal Variability of Contaminants Within Estuarine Sediments and Native Olympia Oysters: A Contrast Between a Developed and an Undeveloped Estuary

– see front matter. Published by Elsevier B.V. http://dx.doi.org/10.1016/j.scitotenv.2013.07.127