Eve-Lyn S. Hinckley

NEON terrestrial field observations: designing continental‐scale, standardized sampling

Rapid changes in climate and land use and the resulting shifts in species distributions and ecosystem functions have motivated the development of the National Ecological Observatory Network (NEON). Integrating across spatial scales from ground sampling to remote sensing, NEON will provide data for users to address ecological responses to changes in climate, land use, and species invasion across the United States for at least 30 years. Although NEON remote sensing and tower sensor elements are relatively well known, the biological measurements are not. This manuscript describes NEON terrestrial sampling, which targets organisms across a range of generation and turnover times, and a hierarchy of measurable biological states. Measurements encompass species diversity, abundance, phenology, demography, infectious disease, ecohydrology, and biogeochemistry. The continental-scale sampling requires collection of comparable and calibrated data using transparent methods. Data will be publicly available in a variety of formats and suitable for integration with other long-term efforts. NEON will provide users with the data necessary to address large-scale questions, challenge current ecological paradigms, and forecast ecological change.

Experimental removal and addition of leaf litter inputs reduces nitrate production and loss in a lowland tropical forest

Environmental perturbations such as changes in land use, climate, and atmospheric carbon dioxide concentrations may alter organic matter inputs to surface soils. While the carbon (C) cycle response to such perturbations has received considerable attention, potential responses of the soil nitrogen (N) cycle to changing organic matter inputs have been less well characterized. Changing litter inputs to surface to soils may alter the soil N cycle directly, by controlling N substrate availability, or indirectly, via interactions with soil C biogeochemistry. We investigated soil N-cycling responses to a leaf litter manipulation in a lowland tropical forest using isotopic and molecular techniques. Both removing and doubling leaf litter inputs decreased the size of the soil nitrate pool, gross nitrification rates, and the relative abundance of ammonia-oxidizing microorganisms. Gross nitrification rates were correlated with the relative abundance of ammonia-oxidizing archaea, and shifts in the N-cycling microbial community composition correlated with concurrent changes in edaphic properties, notably pH and C:N ratios. These results highlight the importance of understanding coupled biogeochemical cycles in global change scenarios and suggest that environmental perturbations that alter organic matter inputs in tropical forests could reduce inorganic N losses to surface waters and the atmosphere by limiting nitrate production.

Nitrogen retention and transport differ by hillslope aspect at the rain‐snow transition of the Colorado Front Range

Over a decade of research in the alpine zone of the Colorado Front Range has shown that atmospheric nitrogen (N) deposition originating from source areas in low elevation, developed areas, has changed ecosystem stoichiometry, nutrient transformations, and aquatic community structure. Less research has occurred in the montane zone, which sits at the current rain-snow transition and is vulnerable to climate change, land cover disturbances, and increased N loading. We conducted lithium bromide and 15N-nitrate (15NO3−) tracer studies during spring snowmelt to determine the immediate fate of N in a forested catchment. Measurements of N species and applied tracers in ecosystem pools and soil solution on north and south facing slopes provided a means of determining export pathways and uptake of deposited N. Our results indicate that NO3− residence time is longer within north than south facing slope soils, due to longer contact with the soil matrix, greater microbial biomass N, and a larger soil organic matter pool. On the north facing slope, >50% of the 1 kg ha−1 of 15NO3− applied was retained in soil and vegetation pools. On the south facing slope, rapid transport during sporadic snowmelt events reduced total recovery of the 15N label in ecosystem pools to 16–34%. Our results suggest that snowmelt events quickly transport N through south facing slope soils, potentially contributing more N to aquatic systems than north facing slopes. Thus, it is important to consider how the fate of N differs by hillslope aspect when predicting catchment-scale N export and determining ecosystem N status across the Colorado Front Range.

Frontiers in Ecosystem Ecology from a Community Perspective: The Future is Boundless and Bright

In an era of increasingly multidisciplinary science, it is essential to identify the frontiers as well as the core of an inherently holistic discipline: ecosystem ecology. To achieve this, we led a series of town hall events at multiple scientific-society meetings over a two-year period followed by a workshop with a diverse set of ecosystem scientists to review and expand on those outcomes. For the society town hall events ~70 individuals were asked to give short, provocative (the so-called, soapbox) presentations and audience members (~250) filled out tailored surveys. Both presentations and surveys were transcribed and themes were extracted and analyzed before and during the follow-up workshop. Formal ethnographic analysis of the soapbox texts produced three major themes: “frontiers,” “capacity building,” and “barriers to implementation,” including several subthemes. A workshop was held to analyze the ethnographic data where workshop participants further grouped key frontiers as (1) rethinking the drivers of ecosystem change, (2) new insights into ecosystem process and function, (3) evaluating human dimensions of ecosystem ecology, and (4) new angles on problem-solving/applied research. In addition, 13 experts were interviewed to crosscheck interpretations. The survey data, workshop deliberations, and expert interviews suggest that the core of these frontiers defines the current state and provides the foundational knowledge that bounds ecosystem ecology as a discipline. In response to emerging complex environmental issues and ongoing socioecological challenges, the edges of these frontiers expand fundamental ecosystem ecology to engage and intersect with disciplinary realms to create new ways of making sense of complexity, and to develop an even more holistic understanding of ecological systems. In this paper, we present our synthesis of the frontier and core research themes with the goal of inspiring the next wave of studies in ecosystem ecology.

Transformations, transport, and potential unintended consequences of high sulfur inputs to Napa Valley vineyards.

Unintended anthropogenic deposition of sulfur (S) to forest ecosystems has a range of negative consequences, identified through decades of research. There has been far less study of purposeful S use in agricultural systems around the world, including the application of elemental sulfur (S0) as a quick-reacting fungicide to prevent damage to crops. Here we report results from a three-year study of the transformations and flows of applied S0 in soils, vegetation, and hydrologic export pathways of Napa Valley, CA vineyards, documenting that all applied S is lost from the vineyard ecosystem on an annual basis. We found that S0 oxidizes rapidly to sulfate () on the soil surface where it then accumulates over the course of the growing season. Leaf and grape tissues accounted for only 7–13% of applied S whereas dormant season cover crops accounted for 4–10% of applications. Soil S inventories were largely and ester-bonded sulfates; they decreased from 1,623 ± 354 kg ha-1 during the dry growing season to 981 ± 526 kg ha-1 (0–0.5 m) during the dormant wet season. Nearly all S applied to the vineyard soils is transported offsite in dissolved oxidized forms during dormant season rainstorms. Thus, the residence time of reactive S is brief in these systems, and largely driven by hydrology. Our results provide new insight into how S use in vineyards constitutes a substantial perturbation of the S cycle in Northern California winegrowing regions and points to the unintended consequences that agricultural S use may have at larger scales.

Digging Into the World Beneath Our Feet: Bridging Across Scales in the Age of Global Change

Climate change, land use practices, and other consequences of a growing human population affect soil sustainability. Unfortunately, scientists studying belowground processes have traditionally been limited to data and models that capture intermediate spatial and temporal scales, failing to accurately characterize soil phenomena at societally relevant scales, including the larger spatial scales at which many policy decisions are made.

Unraveling the effects of spatial variability and relic DNA on the temporal dynamics of soil microbial communities

Few studies have comprehensively investigated the temporal variability in soil microbial communities despite widespread recognition that the belowground environment is dynamic. In part, this stems from the challenges associated with the high degree of spatial heterogeneity in soil microbial communities and because the presence of relic DNA (DNA from non-living cells) may dampen temporal signals. Here we disentangle the relationships among spatial, temporal, and relic DNA effects on bacterial, archaeal, and fungal communities in soils collected from contrasting hillslopes in Colorado, USA. We intensively sampled plots on each hillslope over six months to discriminate between temporal variability, intra-plot spatial heterogeneity, and relic DNA effects on the soil prokaryotic and fungal communities. We show that the intra-plot spatial variability in microbial community composition was strong and independent of relic DNA effects with these spatial patterns persisting throughout the study. When controlling for intra-plot spatial variability, we identified significant temporal variability in both plots over the six-month study. These microbial communities were more dissimilar over time after relic DNA was removed, suggesting that relic DNA hinders the detection of important temporal dynamics in belowground microbial communities. We identified microbial taxa that exhibited shared temporal responses and show these responses were often predictable from temporal changes in soil conditions. Our findings highlight approaches that can be used to better characterize temporal shifts in soil microbial communities, information that is critical for predicting the environmental preferences of individual soil microbial taxa and identifying linkages between soil microbial community composition and belowground processes. Importance Nearly all microbial communities are dynamic in time. Understanding how temporal dynamics in microbial community structure affect soil biogeochemistry and fertility are key to being able to predict the responses of the soil microbiome to environmental perturbations. Here we explain the effects of soil spatial structure and relic DNA on the determination of microbial community fluctuations over time. We found that intensive spatial sampling is required to identify temporal effects in microbial communities because of the high degree of spatial heterogeneity in soil and that DNA from non-living microbial cells masks important temporal patterns. We identified groups of microbes that display correlated behavior over time and show that these patterns are predictable from soil characteristics. These results provide insight into the environmental preferences and temporal relationships between individual microbial taxa and highlight the importance of considering relic DNA when trying to detect temporal dynamics in belowground communities.