Felicia Tam

Surface-Enhanced Raman Spectroscopy of DNA

We report a method for obtaining highly reproducible surface-enhanced Raman spectroscopy (SERS) of single and double-stranded thiolated DNA oligomers. Following a protocol that relaxes the DNA into an extended conformation, SERS spectra of DNA oligonucleotides are found to be extremely similar, strongly dominated by the Stokes modes of adenine. A spectral correlation function analysis useful for assessing reproducibility and for quantifying the highly complex changes corresponding to modifications in molecular conformation of the adsorbate molecules is introduced. This approach is used to monitor the interaction of DNA with cisplatin, a chemotherapy agent in widespread use.

Direct Optical Detection of Aptamer Conformational Changes Induced by Target Molecules

Aptamers are single-stranded DNA/RNA oligomers that fold into three-dimensional conformations in the presence of specific molecular targets. Surface-enhanced Raman spectroscopy (SERS) of thiol-bound DNA aptamer self-assembled monolayers on Au nanoshell surfaces provides a direct, label-free detection method for the interaction of DNA aptamers with target molecules. A spectral cross-correlation function, Gamma, is shown to be a useful metric to quantify complex changes in the SERS spectra resulting from conformational changes in the aptamer induced by target analytes. While the pristine, unexposed anti-PDGF (PDGF = platelet-derived growth factor) aptamer yields highly reproducible spectra with Gamma = 0.91 +/- 0.01, following incubation with PDGF, the reproducibility of the SERS spectra is dramatically reduced, yielding Gamma = 0.67 +/- 0.02. This approach also allows us to discriminate the response of a cocaine aptamer to its target from its weaker response to nonspecific analyte molecules.

Mesoscopic nanoshells: Geometry-dependent plasmon resonances beyond the quasistatic limit

The plasmon response of a spherical metallic shell becomes significantly more complex as its size is increased beyond the quasistatic limit. With increasing size and decreasing aspect ratio (r1/r2), higher order multipolar modes contribute in a more dominant manner, and two distinct core-shell geometries exist that provide the same dipole plasmon resonance, with differing relative multipolar contributions in their overall spectral response. With further increase in particle size, the geometric tunability of the core-shell structure disappears, and in the infinite radius limit the plasmon response is consistent with that of a thin metallic film.