Franck Dumas

Circulation and suspended sediment transport in a coral reef lagoon: The south-west lagoon of New Caledonia

The south-west lagoon of New Caledonia is a wide semi-open coral reef lagoon bounded by an intertidal barrier reef and bisected by numerous deep inlets. This paper synthesizes findings from the 2000-2008 French National Program EC2CO-PNEC relative to the circulation and the transport of suspended particles in this lagoon. Numerical model development (hydrodynamic, fine suspended sediment transport, wind-wave, small-scale atmospheric circulation) allowed the determination of circulation patterns in the lagoon and the charting of residence time, the later of which has been recently used in a series of ecological studies. Topical studies based on field measurements permitted the parameterisation of wave set-up induced by the swell breaking on the reef barrier and the validation of a wind-wave model in a fetch-limited environment. The analysis of spatial and temporal variability of suspended matter concentration over short and long time-scales, the measurement of grain size distribution and the density of suspended matter (1.27 kg l(-1)), and the estimation of erodibility of heterogeneous (sand/mud, terrigenous/biogenic) soft bottoms was also conducted. Aggregates were shown to be more abundant near or around reefs and a possible biological influence on this aggregation is discussed. Optical measurements enabled the quantification of suspended matter either in situ (monochromatic measurements) or remotely (surface spectral measurements and satellite observations) and provided indirect calibration and validation of a suspended sediment transport model. The processes that warrant further investigation in order to improve our knowledge of circulation and suspended sediment transport in the New Caledonia lagoon as well as in other coral reef areas are discussed, as are the relevance and reliability of the numerical models for this endeavour.

Tidal flushing and wind driven circulation of Ahe atoll lagoon (Tuamotu Archipelago, French Polynesia) from in situ observations and numerical modelling.

Hydrodynamic functioning and water circulation of the semi-closed deep lagoon of Ahe atoll (Tuamotu Archipelago, French Polynesia) were investigated using 1 year of field data and a 3D hydrodynamical model. Tidal amplitude averaged less than 30 cm, but tide generated very strong currents (2 ms(-1)) in the pass, creating a jet-like circulation that partitioned the lagoon into three residual circulation cells. The pass entirely flushed excess water brought by waves-induced radiation stress. Circulation patterns were computed for climatological meteorological conditions and summarized with stream function and flushing time. Lagoon hydrodynamics and general overturning circulation was driven by wind. Renewal time was 250 days, whereas the e-flushing time yielded a lagoon-wide 80-days average. Tide-driven flush through the pass and wind-driven overturning circulation designate Ahe as a wind-driven, tidally and weakly wave-flushed deep lagoon. The 3D model allows studying pearl oyster larvae dispersal in both realistic and climatological conditions for aquaculture applications.

Numerical Wave Modeling in Conditions with Strong Currents: Dissipation, Refraction, and Relative Wind

AbstractCurrents effects on waves have led to many developments in numerical wave modeling over the past two decades, from numerical choices to parameterizations. The performance of numerical models in conditions with strong currents is reviewed here, and observed strong effects of opposed currents and modulations of wave heights by tidal currents in several typical situations are interpreted. For current variations on small scales, the rapid steepening of the waves enhances wave breaking. Using different parameterizations with a dissipation rate proportional to some measure of the wave steepness to the fourth power, the results are very different, none being fully satisfactory, which points to the need for more measurements and further refinements of parameterizations. For larger-scale current variations, the observed modifications of the sea state are mostly explained by refraction of waves over currents and relative wind effects, that is, the wind speed relevant for wave generation is the speed in the ...

Numerical Wave Modeling in Conditions with Strong Currents: Dissipation, Refraction, and Relative Wind. J

AbstractCurrents effects on waves have led to many developments in numerical wave modeling over the past two decades, from numerical choices to parameterizations. The performance of numerical models in conditions with strong currents is reviewed here, and observed strong effects of opposed currents and modulations of wave heights by tidal currents in several typical situations are interpreted. For current variations on small scales, the rapid steepening of the waves enhances wave breaking. Using different parameterizations with a dissipation rate proportional to some measure of the wave steepness to the fourth power, the results are very different, none being fully satisfactory, which points to the need for more measurements and further refinements of parameterizations. For larger-scale current variations, the observed modifications of the sea state are mostly explained by refraction of waves over currents and relative wind effects, that is, the wind speed relevant for wave generation is the speed in the ...

Bivalve larvae transport and connectivity within the Ahe atoll lagoon (Tuamotu Archipelago), with application to pearl oyster aquaculture management.

Patterns of bivalve larvae dispersal in the deep Ahe atoll lagoon was studied by using a numerical 3D transport model (MARS3D) coupled with a vertical swimming sub-model, forced mainly by tide and wind-induced currents. The simulations were validated against observations of larval dispersal monitored several days throughout the lagoon. Connectivity matrices describing larval exchanges inside the lagoon were inferred. Larvae displayed a significant dispersal capacity at the lagoon scale, especially with dominant eastern winds. With southeastern winds, larvae mostly remained in their origin sector. The total export rate of the larvae, toward the ocean through the pass and shallow lagoon borders, was independent of the wind conditions, with 1% of the total concentration exported per day. However, the tide-driven currents efficiently flushed larvae in sectors close to the pass. Connectivity matrices suggest that the south and west sectors were more suitable for spat collecting and that central sectors would be efficient sanctuaries if genitors were accumulated.

Larval Dispersal Modeling of Pearl Oyster Pinctada margaritifera following Realistic Environmental and Biological Forcing in Ahe Atoll Lagoon

Studying the larval dispersal of bottom-dwelling species is necessary to understand their population dynamics and optimize their management. The black-lip pearl oyster (Pinctada margaritifera) is cultured extensively to produce black pearls, especially in French Polynesias atoll lagoons. This aquaculture relies on spat collection, a process that can be optimized by understanding which factors influence larval dispersal. Here, we investigate the sensitivity of P. margaritifera larval dispersal kernel to both physical and biological factors in the lagoon of Ahe atoll. Specifically, using a validated 3D larval dispersal model, the variability of lagoon-scale connectivity is investigated against wind forcing, depth and location of larval release, destination location, vertical swimming behavior and pelagic larval duration (PLD) factors. The potential connectivity was spatially weighted according to both the natural and cultivated broodstock densities to provide a realistic view of connectivity. We found that the mean pattern of potential connectivity was driven by the southwest and northeast main barotropic circulation structures, with high retention levels in both. Destination locations, spawning sites and PLD were the main drivers of potential connectivity, explaining respectively 26%, 59% and 5% of the variance. Differences between potential and realistic connectivity showed the significant contribution of the pearl oyster broodstock location to its own dynamics. Realistic connectivity showed larger larval supply in the western destination locations, which are preferentially used by farmers for spat collection. In addition, larval supply in the same sectors was enhanced during summer wind conditions. These results provide new cues to understanding the dynamics of bottom-dwelling populations in atoll lagoons, and show how to take advantage of numerical models for pearl oyster management.

Identification of typical scenarios for the surface Lagrangian residual circulation in the Iroise Sea

[1] This paper describes the surface Lagrangian residual circulation (LRC) over 2.5 day intervals in the Iroise Sea, west of France, and evaluates, for operational purposes, the influence of the different physical mechanisms that govern it. The method consists of the calculation of water displacements with a diagnostic Lagrangian tool that computes the trajectories of numerical particles in a given velocity field. The LRC is inferred from trajectories integrated over five M2 tidal cycles. The analysis is applied to both gridded genuine current measurements and ocean model outputs: the sea surface currents are derived from high‐frequency (HF) radar measurements and from MARS, a 3‐D regional ocean model used here in idealized configurations. To substantiate the analysis, the Lagrangian residual currents are also compared to genuine movements of drifters released in the Iroise Sea in 2005 and 2007. The LRC is mapped for typical scenarios identified from the Lagrangian analysis of HF radar surface currents measured in winter and summer, under weak ( 10 m/s) wind conditions, and in neap tide and spring tide seasons. Idealized numerical simulations that switch on and off each individual physical process are used to isolate in the LRC the patterns induced by the atmospheric forcing, tides, and density‐driven currents.

Circulation around La Réunion and Mauritius islands in the south‐western Indian Ocean: A modeling perspective

The objective of this study is to document the circulation in the vicinity of La Reunion and Mauritius islands, i.e., within 500 km offshore, on the intraseasonal time scale, using a high-resolution realistic modeling strategy. The simulated sea level anomalies, water mass properties, and large-scale circulation compare favorably with satellite and in situ observations. Our high-resolution simulation suggests that the currents around the islands are maximal locally, oriented southwestward, to the southeast of both islands which is not visible in low-resolution satellite observations. It also highlights the high degree of variability of the circulation, which is dominated by westward propagating features. The predominant time scale of variability is 60 days. This coincides with the period of a barotropic mode of variability confined to the Mascarene Basin. The characteristics of the westward propagating anomalies are related to baroclinic Rossby waves crossing the Indian Ocean but only in the long-wave resting ocean limit. Tracking those anomalies as eddies shows that they also have a meridional tendency in their trajectory, northward for cyclones and southward for anticyclones, which is consistent with previous studies. Sensitivity experiments suggest that they are predominantly advected from the east, but there is also local generation in the lee of the islands, due to interaction between the circulation and topography.

Objective assessment of the contribution of the RECOPESCA network to the monitoring of 3D coastal ocean variables in the Bay of Biscay and the English Channel

In the Bay of Biscay and the English Channel, in situ observations represent a key element to monitor and to understand the wide range of processes in the coastal ocean and their direct impacts on human activities. An efficient way to measure the hydrological content of the water column over the main part of the continental shelf is to consider ships of opportunity as the surface to cover is wide and could be far from the coast. In the French observation strategy, the RECOPESCA programme, as a component of the High frequency Observation network for the environment in coastal SEAs (HOSEA), aims to collect environmental observations from sensors attached to fishing nets. In the present study, we assess that network using the Array Modes (ArM) method (a stochastic implementation of Le Hénaff et al. Ocean Dyn 59: 3–20. doi: 10.1007/s10236-008-0144-7, 2009). That model ensemble-based method is used here to compare model and observation errors and to quantitatively evaluate the performance of the observation network at detecting prior (model) uncertainties, based on hypotheses on error sources. A reference network, based on fishing vessel observations in 2008, is assessed using that method. Considering the various seasons, we show the efficiency of the network at detecting the main model uncertainties. Moreover, three scenarios, based on the reference network, a denser network in 2010 and a fictive network aggregated from a pluri-annual collection of profiles, are also analysed. Our sensitivity study shows the importance of the profile positions with respect to the sheer number of profiles for ensuring the ability of the network to describe the main error modes. More generally, we demonstrate the capacity of this method, with a low computational cost, to assess and to design new in situ observation networks.

Modelling larval dispersal of Pecten maximus in the English Channel: a tool for the spatial management of the stocks

The great scallop Pecten maximus supports one of the most important and valuable commercial fisheries around the British Isles and in the northwest of France, but the resource is mainly managed at the scale of each local fishing ground through a combination of European, national and local measures. To analyse the larval dispersal pathways and connectivity patterns among fishing grounds of the great scallop in the Celtic Sea and the English Channel, a particle tracking model was developed. The model combined a 3D physical circulation model that simulated currents and temperature fields and a scallop larval submodel that took into account a temperature-dependent planktonic larval duration and an active vertical swimming behaviour. Due to the lack of stock assessment at the regional scale, the location of the main fishing grounds was established by combining different sources (e.g. grey literature, unpublished scientific surveys, vessel monitoring data, fishermen) while the spawning biomass of each stock was estimated from landings data. Results indicated that each local stock could not be considered as a single independent management unit and that all stocks except that of the Bay of Brest were connected to neighbouring stocks, suggesting that the management should be defined in a metapopulation context. Three major groups of strongly interconnected stocks including two or three stocks exhibiting high retention and self-recruitment rates and some peripheral stocks with a low self-recruitment rate were defined: the North Brittany and Channel Islands, the eastern English Channel, and the SW of England. Our results were discussed in terms of the definition of management units in comparison with genetic and phenotypic data, and in terms of resource management in a transnational context.