Gabriel Gorsky

Open science resources for the discovery and analysis of Tara Oceans data

The Tara Oceans expedition (2009–2013) sampled contrasting ecosystems of the world oceans, collecting environmental data and plankton, from viruses to metazoans, for later analysis using modern sequencing and state-of-the-art imaging technologies. It surveyed 210 ecosystems in 20 biogeographic provinces, collecting over 35,000 samples of seawater and plankton. The interpretation of such an extensive collection of samples in their ecological context requires means to explore, assess and access raw and validated data sets. To address this challenge, the Tara Oceans Consortium offers open science resources, including the use of open access archives for nucleotides (ENA) and for environmental, biogeochemical, taxonomic and morphological data (PANGAEA), and the development of on line discovery tools and collaborative annotation tools for sequences and images. Here, we present an overview of Tara Oceans Data, and we provide detailed registries (data sets) of all campaigns (from port-to-port), stations and sampling events.

Biogenic debris from the pelagic tunicate, Oikopleura dioica, and its role in the vertical transport of a transuranium element

Abstract The accumulation and retention of 241 Am by the pelagic tunicate Oikopleura dioica were examined using laboratory cultures and radiotracer methodology. Animals (i.e., trunks and tails) and discarded empty houses accumulated Am from seawater, giving volume/volume concentration factors of 59±8 and 10±1, respectively. The half-time for retention of Am in empty labelled houses transferred to non-contaminated seawater was 29 h; the retention half-time of Am in houses discarded by larvaceans feeding on Am-labelled diatoms was 219 h; the half-time of Am in fecal pellets produced by animals feeding on a monospecific diet of diatoms was 134 h, and 247 h for fecal pellets from animals fed a mixed diet. Approximately 30% of filtered cells remained in houses after the houses were discarded. Sinking rates of discarded houses and fecal pellets were found to vary with temperature and size, ranging from 26–157 m day −1 (house) and from 25–166 m day −1 (fecal pellets). The ubiquity and abundance of appendicularians, together with their prodigious production of houses (e.g., 10±2 houses day −1 at 17°C for each experimental animal) point to their potential significance in the vertical transport of Am, and probably other reactive metals, to intermediate depths in the ocean.

Large particulate matter in the Western Mediterranean: I. LPM distribution related to mesoscale hydrodynamics

The relationship between mesoscale hydrodynamics and the distribution of large particulate matter (LPM, particles larger than 200 Am) in the first 1000 m of the Western Mediterranean basin was studied with a microprocessor-driven CTD-video package, the Underwater Video Profiler (UVP). Observations made during the last decade showed that, in late spring and summer, LPM concentration was high in the coastal part of the Western Mediterranean basin at the shelf break and near the continental slope (computed maximum: 149 A gCl 1 between 0 and 100 m near the Spanish coast of the Gibraltar Strait). LPM concentration decreased further offshore into the central Mediterranean Sea where, below 100 m, it remained uniformly low, ranging from 2 to 4 A gCl 1 . However, a strong variability was observed in the different mesoscale structures such as the Almeria–Oran jet in the Alboran Sea or the Algerian eddies. LPM concentration was up to one order of magnitude higher in fronts and eddies than in the adjacent oligotrophic Mediterranean waters (i.e. 35 vs. 8 A gCl 1 in the Alboran Sea or 16 vs. 3 A gCl 1 in a small shear cyclonic eddy). Our observations suggest that LPM spatial heterogeneity generated by the upper layer mesoscale hydrodynamics extends into deeper layers. Consequently, the superficial mesoscale dynamics may significantly contribute to the biogeochemical cycling between the upper and meso-pelagic layers. D 2002 Elsevier Science B.V. All rights reserved.

Marine snow latitudinal distribution in the equatorial Pacific along 180

[1]xa0Marine snow (MS) distribution from the surface to 1000 m depth was determined in the equatorial Pacific using the underwater video profiler during the Etude du Broutage en Zone Equatoriale cruise in fall 1996. The latitudinal transect was carried out at 17 stations along the 180° meridian from 8°S to 8°N during a cold phase of El Nino-Southern Oscillation. Higher MS concentrations were found below the equatorial zone than poleward. At the equator the estimated integrated MS carbon m−2 in the upper kilometer was 5.7 g m−2, while both southward and northward (between 1° and 8°) the mean integrated MS carbon was about 2.7 g. m−2. In the upper 50 m the MS carbon was twofold lower than the combined carbon of autotrophic and heterotrophic protists and four times lower than the mesozooplankton carbon biomass, both measured concurrently during the cruise. Different water bodies had different MS content. The highest concentrations were found in the South Equatorial Current, the South Equatorial Counter Current, and the North Equatorial Countercurrent. Tropical waters at the south in the South Subsurface Countercurrents and the warm northern superficial waters had the lowest MS biomass. Mechanistically, a latitudinal “conveyor belt”, a poleward divergence of upwelled waters that return to the equator after being downwelled at north and south convergent zones, may partially explain the vertical distribution of particulate matter observed during the studied period.