Gerd Gleixner

Variable effects of nitrogen additions on the stability and turnover of soil carbon

Soils contain the largest near-surface reservoir of terrestrial carbon and so knowledge of the factors controlling soil carbon storage and turnover is essential for understanding the changing global carbon cycle. The influence of climate on decomposition of soil carbon has been well documented, but there remains considerable uncertainty in the potential response of soil carbon dynamics to the rapid global increase in reactive nitrogen (coming largely from agricultural fertilizers and fossil fuel combustion). Here, using 14C, 13C and compound-specific analyses of soil carbon from long-term nitrogen fertilization plots, we show that nitrogen additions significantly accelerate decomposition of light soil carbon fractions (with decadal turnover times) while further stabilizing soil carbon compounds in heavier, mineral-associated fractions (with multidecadal to century lifetimes). Despite these changes in the dynamics of different soil pools, we observed no significant changes in bulk soil carbon, highlighting a limitation inherent to the still widely used single-pool approach to investigating soil carbon responses to changing environmental conditions. It remains to be seen if the effects observed here—caused by relatively high, short-term fertilizer additions—are similar to those arising from lower, long-term additions of nitrogen to natural ecosystems from atmospheric deposition, but our results suggest nonetheless that current models of terrestrial carbon cycling do not contain the mechanisms needed to capture the complex relationship between nitrogen availability and soil carbon storage.

The role of biodiversity for element cycling and trophic interactions: an experimental approach in a grassland community

Abstract The focus of a new experiment, set up in Jena in spring 2002, are the effects of biodiversity on element cycles and the interaction of plant diversity with herbivores and soil fauna. The experimental design explicitly addresses criticisms provoked by previous biodiversity experiments. In particular, the choice of functional groups, the statistical separation of sampling versus complementarity effects, and testing for the effects of particular functional groups differ from previous experiments. Based on a species pool of 60 plant species common to the Central European Arrhenatherion grasslands, mixtures of one to 16 (60) species and of one to four plant functional groups were established on 90 plots (20 m × 20 m) with nested experiments. In order to test specific hypotheses 390 additional small-area plots (3.5 m × 3.5 m) were set-up. Exact replicates of all species mixtures serve to assess the variability in ecosystem responses. In a dominance experiment, the effects of interactions among nine selected highly productive species are studied. Each species is grown as monoculture replicated once. Effekte der Biodiversitat auf Elementkreislaufe und Wechselwirkungen der pflanzlichen Artenvielfalt mit Bodenfauna und Herbivoren stehen im Mitttelpunkt eines neuen Experiments, das im Fruhjahr 2002 in Jena eingerichtet wurde. Das Versuchsdesign berucksichtigt ausdrucklich die Kritik, die an den Aufbau fruherer Biodiversitatsversuche gerichtet wurde. Die Auswahl funktioneller Gruppen von Pflanzenarten, die statistischen Moglichkeiten, die Effekte des “Sampling” gegen Komplementaritat zu trennen sowie den Einflus funktioneller Gruppen zu uberprufen, unterscheiden dieses Experiment von fruheren Versuchen. Sechzig typische Pflanzenarten der zentraleuropaischen Frischwiesen (Arrhenatherion) bilden den Artenpool fur den Versuch. Auf 90 Flachen wurden Artenmischungen etabliert, die 1 bis 16 (60) Arten und 1 bis 4 funktionelle Gruppen dieser Pflanzenarten enthalten. Die Versuchsparzellen haben eine Grose von 20 m × 20 m, auf denen in genesteter Anordnung verschiedene Teilexperimente durchgefuhrt werden. Zusatzlich wurden 390 kleine Parzellen (3.5 m × 3.5 m) angelegt, um spezifische Hypothesen zu uberprufen. Alle Arten werden hier mit je einer Wiederholung als Monokulturen kultiviert. Identische Wiederholungen aller Artenmischungen sollen deren Variabilitat untersuchen. In einem Dominanz-Versuch werden die Effekte der Wechselwirkungen zwischen 9 ausgewahlten hochproduktiven Arten untersucht.

Correlations between the 13C Content of Primary and Secondary Plant Products in Different Cell Compartments and That in Decomposing Basidiomycetes

Relative carbon isotope ratio ([delta]13C values) of primary and secondary products from different compartments of annual plants, pine needles, wood, and decomposing Basidiomycetes have been determined. An enrichment in 13C was found for storage tissues of annual plants, because of the high level of the primary storage products sucrose and starch; however, the enrichment was even greater in leaf starch. All of these compounds had the same relative 13C enrichment in positions 3 and 4 of glucose. Secondary products in conifer needles (lignin, lipids) were depleted in 13C by 1 to 2 [per mille (thousand) sign] relative to carbohydrates from the same origin. Air pollution caused a small decrease in [delta]13C values; however, the relative content of plant products, especially of the soluble polar compounds, was also affected. Decomposing fungi showed a global accumulation of 13C by 4[per mille (thousand) sign] relative to their substrates in wood. Their chitin was enriched by 2[per mille (thousand) sign] relative to the cellulose of the wood. Hence, Basidiomycetes preferentially metabolize “light” molecules, whereas “heavy” molecules are preferentially polymerized. Our results are discussed on the basis of a kinetic isotope effect on the fructose-1,6-bisphosphate aldolase reaction and of metabolic branching on the level of the triose phosphates with varying substrate fluxes.

Molecular dynamics of organic matter in a cultivated soil.

The dynamics of soil organic carbon are included in global carbon (C) cycle scenarios using different, but generally arbitrary defined, kinetic pools. To improve global C models, better relationships between the chemical structure of soil organic matter (SOM) and its kinetic pools are needed. To assess the molecular residence time of SOM and the relation with plant inputs, pyrolysis–GC/MS–C–IRMS was performed on maize plants and on two samples from the same soil that had undergone a vegetation change from the C3 plant wheat to the C4 plant maize. This vegetation change has added naturally 13C-enriched material to the soil. Most pyrolysis products from the maize were derived from polysaccharides and lignins, and were not detected in soils. However, polysaccharide-derived products were also major pyrolysis products in soils, N-containing or unspecific pyrolysis products were also detected. The residence times (based on 13C natural labelling) revealed a continuum of values, that was independent of chemical structure, with only two pyrolysis products presenting a relatively long residence time (ca. 100 years). An unexpected long life-time for N-containing (∼49 years) and polysaccharide-derived (∼54 years) pyrolysis products was found. Our results suggest that mainly recycling of carbon in carbohydrates and N-containing materials in addition to physical and chemical protection is responsible for SOM stabilization in the slow carbon pool.

Plant diversity effects on soil microorganisms support the singular hypothesis

The global decline in biodiversity has generated concern over the consequences for ecosystem functioning and services. Although ecosystem functions driven by soil microorganisms such as plant productivity, decomposition, and nutrient cycling are of particular importance, interrelationships between plant diversity and soil microorganisms are poorly understood. We analyzed the response of soil microorganisms to variations in plant species richness (1-60) and plant functional group richness (1-4) in an experimental grassland system over a period of six years. Major abiotic and biotic factors were considered for exploring the mechanisms responsible for diversity effects. Further, microbial growth characteristics were assessed following the addition of macronutrients. Effects of plant diversity on soil microorganisms were most pronounced in the most diverse plant communities though differences only became established after a time lag of four years. Differences in microbial growth characteristics indicate successional changes from a disturbed (zymogeneous) to an established (autochthonous) microbial community four years after establishment of the experiment. Supporting the singular hypothesis for plant diversity, the results suggest that plant species are unique, each contributing to the functioning of the belowground system. The results reinforce the need for long-term biodiversity experiments to fully appreciate consequences of current biodiversity loss for ecosystem functioning.

Plant diversity increases soil microbial activity and soil carbon storage

Plant diversity strongly influences ecosystem functions and services, such as soil carbon storage. However, the mechanisms underlying the positive plant diversity effects on soil carbon storage are poorly understood. We explored this relationship using long-term data from a grassland biodiversity experiment (The Jena Experiment) and radiocarbon ((14)C) modelling. Here we show that higher plant diversity increases rhizosphere carbon inputs into the microbial community resulting in both increased microbial activity and carbon storage. Increases in soil carbon were related to the enhanced accumulation of recently fixed carbon in high-diversity plots, while plant diversity had less pronounced effects on the decomposition rate of existing carbon. The present study shows that elevated carbon storage at high plant diversity is a direct function of the soil microbial community, indicating that the increase in carbon storage is mainly limited by the integration of new carbon into soil and less by the decomposition of existing soil carbon.

A proteomic fingerprint of dissolved organic carbon and of soil particles

Mass spectrometry-based proteomics was applied to analyze proteins isolated from dissolved organic matter (DOM). The focal question was to identify the type and biological origin of proteins in DOM, and to describe diversity of protein origin at the level of higher taxonomic units, as well as to detect extracellular enzymes possibly important in the carbon cycle. Identified proteins were classified according to their phylogenetic origin and metabolic function using the National Center for Biotechnology Information (NCBI) protein and taxonomy database. Seventy-eight percent of the proteins in DOM from the lake but less than 50% in forest soil DOM originated from bacteria. In a deciduous forest, the number of identified proteins decreased from 75 to 28 with increasing soil depth and decreasing total soil organic carbon content. The number of identified proteins and taxonomic groups was 50% higher in winter than in summer. In spruce forest, number of proteins and taxonomic groups decreased by 50% on a plot where trees had been girdled a year before and carbohydrate transport to roots was terminated. After girdling, proteins from four taxonomic groups remained as compared to nine taxonomic groups in healthy forest. Enzymes involved in degradation of organic matter were not identified in free soil DOM. However, cellulases and laccases were found among proteins extracted from soil particles, indicating that degradation of soil organic matter takes place in biofilms on particle surfaces. These results demonstrate a novel application of proteomics to obtain a “proteomic fingerprint” of presence and activity of organisms in an ecosystem.

Plant compounds and their turnover and stability as soil organic matter

Publisher Summary This chapter reviews current knowledge on the stabilization of organic compounds (SOM). The focus of the chapter is on the chemical stability of molecules, the interactions of organic molecules with clay or metal (Fe or Al) oxides and hydroxides, and the possibility of biological carbon stabilization. The turnover and stability of SOM depends mainly on environmental and biological parameters. Either biomass production or decomposition rates are affected. Additionally, soil matrix and litter quality and fire frequencies stabilize carbon in soils. From the presented results it is obvious that ecosystems have different mechanisms for stabilizing SOM, which lead to different chemistries of the stable compounds. For a better understanding of SOM in the terrestrial carbon cycle and to identify the missing carbon sink one needs: (1) to investigate compound specific mean residence times of stable compounds and biomarkers, (2) to develop new soil carbon models that are able to model the molecular turnover of ∼3C and ∼4C. The combined information provides new insight into soil carbon turnover and helps to understand and to quantify ecosystem specific retention mechanisms for carbon. Additionally, this information may identify the carbon sink capacities of soils.

Molecular insight into soil carbon turnover.

Curie-point pyrolysis-gas chromatography coupled on-line to mass spectrometry (Py-GC/MS) and isotope ratio mass spectrometry (Py-GC/IRMS) were used to determine the individual turnover rate of specific carbohydrates, lignin, lipids and N-containing compounds from French arable soils. The analysed soils were cultivated, either continuously with a C3 plant (wheat delta(13)C-value = -25.2 per thousand), or transferred to a C4 plant (maize delta(13)C-value = -11.4 per thousand) cropping 23 years ago. Most pyrolysis products identified were related to carbohydrates (furans), lipids (hydrocarbons and derivatives of benzene), proteins (nitriles and pyrrole) and lignins (phenols). The relative yield of all individual pyrolysis products was similar in the samples from the maize and control wheat soil. The isotopic enrichment between identical pyrolysis products from the two soils varied from 1 to 12 delta (delta) units, indicating that after 23 years of cultivation 7 to 90% of their C was derived from maize. This suggests a slow mean turnover time varying from 9 to 220 years. Based on the differences in isotopic enrichment of chemical structures after vegetation change the pyrolysis products could be divided into three groups: (i) pyrolysis products with a nearly complete C4 signal, e. g. phenol, derived from lignin degradation products, (ii) pyrolysis products with an intermediate isotopic enrichment of 6-8 per thousand, most likely to be a composite of remaining (possibly physically protected) fragments derived from both maize and native wheat, and (iii) pyrolysis products showing only low enrichments in (13)C of 1-3 per thousand. Most of their precursors were found to be proteinaceaous materials. This indicates that proteins or peptides are indeed preserved during decomposition and humification processes occurring in the soil. Our study highlights the potential of Py-GC/MS-C-IRMS to further novel insights into the dynamics of soil organic constituents. Copyright 1999 John Wiley & Sons, Ltd.

Stable isotope distribution in the major metabolites of source and sink organs of Solanum tuberosum L.: a powerful tool in the study of metabolic partitioning in intact plants

Abstract. A method was developed for the purification of main intermediates and storage products of leaves and tubers of potato for analysis of their 13C content. The method was tested for recovery of metabolites and carbon isotope discrimination during the purification process. Leaf metabolite δ13C values showed an enrichment of starch relative to sucrose and citrate. This result is in agreement with previous findings in other higher plants and indicates the existence of isotope discrimination steps during transport and metabolism of triose-phosphates in potato leaf mesophyll cells. Active anaplerotic replenishment of the tricarboxylic acid cycle in the leaves of the plants investigated was also deduced from the significant 13C enrichment of malate relative to citrate and asparagine/aspartate relative to glutamine/glutamate. Analysis of tuber metabolite δ13C values showed no difference between starch and sucrose. However, tuber sucrose appeared significantly enriched compared with leaf sucrose and also relative to tuber citrate and malate. This finding suggests the existence of sites of isotopic discrimination during sucrose processing in developing tubers. It also confirms that metabolic cycles of sucrose synthesis and breakdown and of hexose-phosphate/triose-phosphate interconversion, which have been described in excised tuber tissue, also occur in intact organs. The δ13C values were also used to estimate the metabolic rate of carbon oxidation in developing tubers on the assumption that pyruvate dehydrogenase is the main site of isotopic discrimination in the tuber cells. The result obtained was in agreement with the available literature, suggesting that analyses of natural isotopic distribution in plant products may be a useful tool for the study of metabolic processes and sink-source relationships in intact plants.