Giuliano Bonanomi

Decomposition and nutrient dynamics in mixed litter of Mediterranean species

In the last decade a great research effort addressed the effects of litter diversity on ecosystem functions, reporting both synergistic and antagonistic effects for decomposition dynamics. Four coexisting Mediterranean species, representing a range of litter quality, were used to arrange litter mixtures at three diversity levels for a litterbag decomposition experiment. Species identity appeared as the major determinant for litter mass loss (Coronilla emerus∼Hedera helix>Festuca drymeia>Quercus ilex) and nutrient release, with rates for all leaf litter types following the sequence K>N>Mg≥Ca>>Fe. Additive diversity effects were prevalent pooling together all data but also for nutrients separately. Antagonistic interactions were more common than synergistic in the cases of mass loss, N and Ca contents, but not for K, Mg and Fe dynamics. The number of species in the litterbag significantly affected the outcome of non-additive interactions, which were mostly antagonistic for two-species mixtures, and synergistic for the combined 4 species. Litter quality appears to be the most important factor affecting mass loss and nutrient dynamics, while litter diversity, influencing the rates of these processes, plays an important role in reducing their variability, thus suggesting a greater stability of ecosystems properties in presence of mixed litter.

Inhibitory and toxic effects of extracellular self-DNA in litter : A mechanism for negative plant-soil feedbacks?

Plant-soil negative feedback (NF) is recognized as an important factor affecting plant communities. The objectives of this work were to assess the effects of litter phytotoxicity and autotoxicity on root proliferation, and to test the hypothesis that DNA is a driver of litter autotoxicity and plant-soil NF. The inhibitory effect of decomposed litter was studied in different bioassays. Litter biochemical changes were evaluated with nuclear magnetic resonance (NMR) spectroscopy. DNA accumulation in litter and soil was measured and DNA toxicity was assessed in laboratory experiments. Undecomposed litter caused nonspecific inhibition of root growth, while autotoxicity was produced by aged litter. The addition of activated carbon (AC) removed phytotoxicity, but was ineffective against autotoxicity. Phytotoxicity was related to known labile allelopathic compounds. Restricted (13) C NMR signals related to nucleic acids were the only ones negatively correlated with root growth on conspecific substrates. DNA accumulation was observed in both litter decomposition and soil history experiments. Extracted total DNA showed evident species-specific toxicity. Results indicate a general occurrence of litter autotoxicity related to the exposure to fragmented self-DNA. The evidence also suggests the involvement of accumulated extracellular DNA in plant-soil NF. Further studies are needed to further investigate this unexpected function of extracellular DNA at the ecosystem level and related cellular and molecular mechanisms.

Assessing occurrence, specificity, and mechanisms of plant facilitation in terrestrial ecosystems

Plants alter environmental conditions enhancing the recruitment of other species. In spite of prior reviews of facilitation, the variability of its occurrence, mechanisms, and specificity across terrestrial ecosystems has not yet been assessed. In this article, we analyze facilitative mechanisms and the distribution of specific traits, such as nitrogen fixation and the presence of fleshy fruits, across ecosystems. A comprehensive database including 2,080 cases of facilitation among higher plants from 539 articles was analyzed with descriptive statistics for occurrences of positive interactions and underlying mechanisms in different terrestrial ecosystems. Positive interactions by plant-induced environmental changes are widespread in a range of ecosystems and not limited to conditions of chronic abiotic stress such as semiarid, alpine, and wetland ecosystems. The capability to act as nurse largely varied among different growth forms, and was observed more frequently for woody than for herbaceous plants. Nitrogen fixers occur much more frequently as nurse plants than as beneficiary plants in facilitation cases due to increasing soil fertility. As known for Mediterranean ecosystems, fleshy-fruited species appear more dependent on facilitative interactions than other plants, being more frequent among beneficiaries than among nurses. The pattern can be extended worldwide being consistent in wetland, temperate, and alpine ecosystems as well. Our description of the relationship between distribution, mechanisms, and specificity of facilitation in terrestrial ecosystems has implications for the understanding of plant community organization considering that plant nursing capacity is affected by their size, architecture, and life span.

Effects of nitrogen enrichment, plant litter removal and cutting on a species-rich Mediterranean calcareous grassland.

Abstract Semi‐natural calcareous grasslands are of great interest in conservation because of their high species richness, but presently they are threatened by both land abandonment and nitrogen eutrophication. The paper reports on a three‐year field experiment conducted in a species‐rich Mediterranean grassland to study the effects of nitrogen application coupled with removal of plant litter and artificial cutting on plant species diversity. Vegetation treatments were applied both to abandoned and adjacent long‐term mowed grassland, to evaluate their restoration value and impact of management abandonment. Cutting significantly increased species diversity in the abandoned area by positively affecting the cover of almost all annual and biennial species and several perennial forbs. Cutting strongly reduced the dominance of perennial grasses. Litter removal had similar effects to cutting, although it was far less effective in increasing species diversity. In the mowed area, cutting abandonment did not reduce species diversity, although the perennial grasses started to increase their cover, while several rare species reduced their abundance. Surprisingly, nitrogen enrichment did not affect species diversity both in the abandoned and mowed area. Our results provided evidence that, within three years, annual cutting can partially restore the species diversity of abandoned grasslands.

Inhibitory effects of extracellular self-DNA: a general biological process?

Self-inhibition of growth has been observed in different organisms, but an underlying common mechanism has not been proposed so far. Recently, extracellular DNA (exDNA) has been reported as species-specific growth inhibitor in plants and proposed as an explanation of negative plant-soil feedback. In this work the effect of exDNA was tested on different species to assess the occurrence of such inhibition in organisms other than plants. Bioassays were performed on six species of different taxonomic groups, including bacteria, fungi, algae, plants, protozoa and insects. Treatments consisted in the addition to the growth substrate of conspecific and heterologous DNA at different concentration levels. Results showed that treatments with conspecific DNA always produced a concentration dependent growth inhibition, which instead was not observed in the case of heterologous DNA. Reported evidence suggests the generality of the observed phenomenon which opens new perspectives in the context of self-inhibition processes. Moreover, the existence of a general species-specific biological effect of exDNA raises interesting questions on its possible involvement in self-recognition mechanisms. Further investigation at molecular level will be required to unravel the specific functioning of the observed inhibitory effects.

Self-DNA inhibitory effects: Underlying mechanisms and ecological implications

ABSTRACT DNA is usually known as the molecule that carries the instructions necessary for cell functioning and genetic inheritance. A recent discovery reported a new functional role for extracellular DNA. After fragmentation, either by natural or artificial decomposition, small DNA molecules (between ∼50 and ∼2000 bp) exert a species specific inhibitory effect on individuals of the same species. Evidence shows that such effect occurs for a wide range of organisms, suggesting a general biological process. In this paper we explore the possible molecular mechanisms behind those findings and discuss the ecological implications, specifically those related to plant species coexistence.