Imran Haider Shamsi

Enhancing crop growth, nutrients availability, economics and beneficial rhizosphere microflora through organic and biofertilizers

Field experiment was conducted on fodder maize to explore the potential of integrated use of chemical, organic and biofertilizers for improving maize growth, beneficial microflora in the rhizosphere and the economic returns. The treatments were designed to make comparison of NPK fertilizer with different combinations of half dose of NP with organic and biofertilizers viz. biological potassium fertilizer (BPF), Biopower, effective microorganisms (EM) and green force compost (GFC). Data reflected maximum crop growth in terms of plant height, leaf area and fresh biomass with the treatment of full NPK; and it was followed by BPF+full NP. The highest uptake of NPK nutrients by crop was recorded as: N under half NP+Biopower; P in BPF+full NP; and K from full NPK. The rhizosphere microflora enumeration revealed that Biopower+EM applied along with half dose of GFC soil conditioner (SC) or NP fertilizer gave the highest count of N-fixing bacteria (Azotobacter, Azospirillum, Azoarcus andZoogloea). Regarding the P-solubilizing bacteria,Bacillus was having maximum population with Biopower+BPF+half NP, andPseudomonas under Biopower+EM+half NP treatment. It was concluded that integration of half dose of NP fertilizer with Biopower+BPF / EM can give similar crop yield as with full rate of NP fertilizer; and through reduced use of fertilizers the production cost is minimized and the net return maximized. However, the integration of half dose of NP fertilizer with biofertilizers and compost did not give maize fodder growth and yield comparable to that from full dose of NPK fertilizers.

NO synthase-generated NO acts downstream of auxin in regulating Fe-deficiency-induced root branching that enhances Fe-deficiency tolerance in tomato plants

In response to Fe-deficiency, various dicots increase their root branching which contributes to the enhancement of ferric-chelate reductase activity. Whether this Fe-deficiency-induced response eventually enhances the ability of the plant to tolerate Fe-deficiency or not is still unclear and evidence is also scarce about the signals triggering it. In this study, it was found that the SPAD-chlorophyll meter values of newly developed leaves of four tomato (Solanum lycocarpum) lines, namely line227/1 and Roza and their two reciprocal F1 hybrid lines, were positively correlated with their root branching under Fe-deficient conditions. It indicates that Fe-deficiency-induced root branching is critical for plant tolerance to Fe-deficiency. In another tomato line, Micro-Tom, the increased root branching in Fe-deficient plants was accompanied by the elevation of endogenous auxin and nitric oxide (NO) levels, and was suppressed either by the auxin transport inhibitors NPA and TIBA or the NO scavenger cPTIO. On the other hand, root branching in Fe-sufficient plants was induced either by the auxin analogues NAA and 2,4-D or the NO donors NONOate or SNP. Further, in Fe-deficient plants, NONOate restored the NPA-terminated root branching, but NAA did not affect the cPTIO-terminated root branching. Fe-deficiency-induced root branching was inhibited by the NO-synthase (NOS) inhibitor L-NAME, but was not affected by the nitrate reductase (NR) inhibitor NH4+, tungstate or glycine. Taking all of these findings together, a novel function and signalling pathway of Fe-deficiency-induced root branching is presented where NOS-generated rather than NR-generated NO acts downstream of auxin in regulating this Fe-deficiency-induced response, which enhances the plant tolerance to Fe-deficiency.

Interactions of cadmium and aluminum toxicity in their effect on growth and physiological parameters in soybean

The effect of Al and Cd on the growth, photosynthesis, and accumulation of Al, Cd and plant nutrients in two soybean genotypes were determined using hydroponic culture. There were six treatments: pH 6.5; pH 4.0; pH 6.5+1.0 μmol/L Cd; pH 4.0+1.0 μmol/L Cd; pH 4.0+150 μmol/L Al; pH 4.0+1.0 μmol/L Cd+150 μmol/L Al. The low pH (4.0) and Al treatments caused marked reduction in root length, shoot height, dry weight, chlorophyll content (SPAD value) and photosynthetic rate. Al-sensitive cv. Zhechun 2 accumulated comparatively more Al and Cd in plants than Al-tolerant cv. Liao 1. Compared with pH 6.5, pH 4.0 resulted in significant increase in Cd and Al concentration in plants. Combined application of Cd and Al enhanced their accumulation in roots, but caused a reduction in shoots. The concentrations of all 10 nutrients (P, K, Ca, Mg, Fe, Mn, Cu, Zn and B), except Mo were also increased when plants were exposed to pH lower than pH 6.5. Al addition caused a reduction in the concentration of most nutrients in plant roots and shoots; but K, Mn and Zn in roots were increased. Treatments with Cd alone or together with Al reduced the concentrations of all the plant nutrients in plants. Al-sensitive genotype Zhechun 2 has lower nutrient concentration than Al-tolerant genotype Liao 1. The current findings imply that Al and Cd are synergistic in their effect on plant growth, physiological traits and nutrient uptake.

Model AVSWAT apropos of simulating non-point source pollution in Taihu lake basin

Accelerated eutrophication and nutrient loads in the lakes are of major concern for human health and environment. This study was undertaken for modeling the non-point source pollution of Taihu lake basin in eastern China. The SWAT model having an interface in ArcView GIS was employed. Model sensitive parameters related to hydrology and water quality were obtained by sensitivity analysis, and then calibrated and validated by comparing model predictions with field data. The GIS showed good potential for parameterization of hill-slopes, channels, and representative slope profiles for SWAT model simulations. In a monthly and daily time step, the models Nash-Sutcliffe coefficient (E) and the coefficient of determination (R(2)) indicated that values of simulated runoff, NH(4)(+)-N and total phosphorus were acceptably closer to the measured data. Surface water parameters especially CN, Soil-AWC and ESCO were the most sensitive and had more recognition in the model. It is concluded that runoff carrying N and P nutrients from chemical fertilizer inputs in agricultural areas is the major contributor to NPSP in the lake basin. So, decrease in excessive use of N and P fertilizers and their synergism with organic manures is recommended that would significantly reduce nutrient pollution in the lake ecosystem.

The alleviation of cadmium toxicity in oilseed rape (Brassica napus) by the application of salicylic acid

To assess the potential role of salicylic acid (SA) in plants under cadmium (Cd) stress, a study was conducted on three different oilseed rape (Brassica napus) genotypes. Gas exchange parameters, photosynthetic pigments, antioxidant enzymes activities, mineral nutrients concentration, and ultrastructural analysis were carried out for assessment. Interestingly, cadmium treatment reduced gas exchange parameters, photosynthetic pigments, mineral elements [calcium (Ca), magnesium (Mg), and iron] and the activity of catalase (CAT) enzyme. Whereas, a pronounced increase was observed in malondialdehyde content and antioxidant enzymes, cadmium and zinc accumulation. Impressively, SA played its role as an alleviatory agent by reducing the damage to all parameters caused by Cd except internal CO2 concentration which was further decreased by SA. Even more, Cd and SA showed synergistic effects by increasing superoxide dismutase, peroxidases, ascorbate peroxidase, guaiacol peroxidase, glutathione reductase and decreasing CAT. Apart from affecting the enzyme activities of oilseed rape, both Cd and SA had the same inhibitory effects on Ca and Mg concentrations. Damage caused by Cd to chloroplast and other internal organelles were almost rectified by SA. Effective role of SA, in alleviating Cd toxicity, could be attributed to the SA-induced improvement of photosynthetic activities, enhancement of antioxidant enzymes activities, reduction in lipid peroxidation and Cd uptake. These findings reflect the possible role of SA as a potential inhibitor of cadmium toxicity by strengthening the internal immunity in oilseed rape.

Synergistic interaction of NaCl and Cd on growth and photosynthetic parameters in soybean genotypes differing in salinity tolerance

The effects of salinity (50 mmol/L NaCl) and Cd (1 μmol/L CdCl2) as sole and combined on growth and photosynthetic parameters were studied using two soybean genotypes, Huachun 18 and NGB. The concentrations of Cd2−, Zn2−, Ca2+, Mg2+, K+ and Na+ were also determined in seeds and pods. Huachun 18 suffered a more serious decrease than NGB in net photosynthetic rate (Pn) in the treatments of salinity stress alone and combined stress (NaCl+Cd), showing that it is relatively sensitive to salinity. The decrease in Pn caused by salt stress in Huachun 18 was mainly due to the reduced total chlorophyll content and photosynthetic efficiency (the ratio of variable fluorescence to maximal fluorescence, Fv/Fm), whereas the decrease in NGB was mainly related to reduced stomatal conductance (Gs). The combined stress of both Na and Cd did not induce further decrease in photosynthesis and fluorescence in the two genotypes relative to salt or Cd stress alone. Greater change in the pod concentrations of Zn2+, Ca2+, Mg2+, K+ and Na− was detected under salt stress for Huachun 18 than for NGB. The results suggested that the interactive effect of NaCl-Cd on growth and nutrient uptake differs between the two soybean genotypes.

Sequence, expression divergence, and complementation of homologous ALCATRAZ loci in Brassica napus

AbstractsThe genomic era provides new perspectives in understanding polyploidy evolution, mostly on the genome-wide scale. In this paper, we show the sequence and expression divergence between the homologous ALCATRAZ (ALC) loci in Brassica napus, responsible for silique dehiscence. We cloned two homologous ALC loci, namely BnaC.ALC.a and BnaA.ALC.a in B. napus. Driven by the 35S promoter, both the loci complemented to the alc mutation of Arabidopsis thaliana, yet only the expression of BnaC.ALC.a was detectable in the siliques of B. napus. Sequence alignment indicated that BnaC.ALC.a and BolC.ALC.a, or BnaA.ALC.a and BraA.ALC.a, possess a high level of similarity. The understanding of the sequence and expression divergence among homologous loci of a gene is of due importance for an effective gene manipulation and TILLING (or ECOTILLING) analysis for the allelic DNA variation at a given locus.

Genome‐wide identification of chromium stress‐responsive micro RNAs and their target genes in tobacco (Nicotiana tabacum) roots

Tobacco easily accumulates certain heavy metals in leaves and thus poses a potential threat to human health. To systematically dissect Cr-responsive microRNAs (miRNAs) and their targets at the global level, 4 small RNA libraries were constructed from the roots of Cr-treated (Cr) and Cr-free (control) for 2 contrasting tobacco genotypes,Yunyan2 (Cr-sensitive) and Guiyan1 (Cr-tolerant). Using high-throughput-sequencing-technology, the authors identified 53 conserved and 29 novel miRNA families. Comparative genomic analysis of 41 conserved Cr-responsive miRNA families revealed that 11 miRNA families showed up-regulation in Guiyan1 but unaltered in Yunyan2, and 17 miRNA families were up-regulated only in Yunyan2 under Cr stress. Only 1 family, miR6149, was down-regulated in Yunyan2 but remained unchanged in Guiyan1. Of the 29 novel miRNA families, 14 expressed differently in the 2 genotypes under Cr stress. Based on a high-throughput degradome sequencing homology search, potential targets were predicted for the 41 conserved and 14 novel Cr-responsive miRNA families. Clusters of Orthologous Groups functional category analysis revealed that some of these predicted target transcripts of miRNAs are responsive to biotic and abiotic stresses. Furthermore, the expression patterns of many Cr-responsive miRNAs were validated by stem-loop real-time transcription polymerase chain reaction. The results of the present study provide valuable information and a framework for understanding the function of miRNAs in Cr tolerance.

Short-Term Responses of Nitrogen Mineralization and Microbial Community to Moisture Regimes in Greenhouse Vegetable Soils

Soil drying and wetting impose significant influences on soil nitrogen (N) dynamics and microbial communities. However, effects of drying-wetting cycles, while common in vegetable soils, especially under greenhouse conditions, have not been well studied. In this study, two greenhouse vegetable soils, which were collected from Xinji (XJ) and Hangzhou (HZ), China, were maintained at 30% and 75% water-holding capacity (WHC), or five cycles of 75% WHC followed by a 7-day dry-down to 30% WHC (DW). Soil inorganic N content increased during incubation. Net N mineralization (Nmin), microbial activity, and microbial biomass were significantly higher in the DW treatment than in the 30% and 75% WHC treatments. The higher water content (75% WHC) treatment had higher Nmin, microbial activity, and microbial biomass than the lower water content treatment (30% WHC). Multivariate analyses of community-level physiological profile (CLPP) and phospholipid fatty acid (PLFA) data indicated that soil moisture regime had a significant effect on soil microbial community substrate utilization pattern and microbial community composition. The significant positive correlation between Nmin and microbial substrate utilization or PLFAs suggested that soil N mineralization had a close relationship with microbial community.

ALLEVIATION OF CADMIUM TOXICITY IN SOYBEAN BY POTASSIUM SUPPLEMENTATION

This study was undertaken to determine the effect of potassium (K) on alleviating cadmium (Cd) toxicity in soybean. Two genotypes of soybean, namely ‘Liao 1’ and ‘Zhechun 3’ were used in hydroponics experiment with the following treatments: control without Cd addition; 1μM Cd addition; K supplementation at a rate of 380 mg L−1; and both Cd addition and K supplementation. Plant growth, chlorophyll content, and fluorescence, rate of photosynthesis and stomatal conductance reduced significantly in Cd-stressed plants. Meanwhile, Cd treatment increased malondialdehyde content, and activities of superoxide dismutase and peroxidase enzymes. Concentration of K, calcium (Ca), magnesium (Mg), and zinc (Zn) in shoot and root tissues also reduced in Cd treatment. ‘Liao 1’ had higher, antioxidant enzyme activity than ‘Zhechun 3’. Potassium supplementation alleviated the reduction of growth, photosynthesis and nutrients uptake in Cd-treated plants. It was concluded that Cd toxicity could be alleviated through enhanced K nutrition in soybean.