Jacob E. Allgeier

Niche width collapse in a resilient top predator following ecosystem fragmentation

Much research has focused on identifying species that are susceptible to extinction following ecosystem fragmentation, yet even those species that persist in fragmented habitats may have fundamentally different ecological roles than conspecifics in unimpacted areas. Shifts in trophic role induced by fragmentation, especially of abundant top predators, could have transcendent impacts on food web architecture and stability, as well as ecosystem function. Here we use a novel measure of trophic niche width, based on stable isotope ratios, to assess effects of aquatic ecosystem fragmentation on trophic ecology of a resilient, dominant, top predator. We demonstrate collapse in trophic niche width of the predator in fragmented systems, a phenomenon related to significant reductions in diversity of potential prey taxa. Collapsed niche width reflects a homogenization of energy flow pathways to top predators, likely serving to destabilize remnant food webs and render apparently resilient top predators more susceptible to extinction through time.

Nutrient supply from fishes facilitates macroalgae and suppresses corals in a Caribbean coral reef ecosystem

On coral reefs, fishes can facilitate coral growth via nutrient excretion; however, as coral abundance declines, these nutrients may help facilitate increases in macroalgae. By combining surveys of reef communities with bioenergetics modeling, we showed that fish excretion supplied 25 times more nitrogen to forereefs in the Florida Keys, USA, than all other biotic and abiotic sources combined. One apparent result was a positive relationship between fish excretion and macroalgal cover on these reefs. Herbivore biomass also showed a negative relationship with macroalgal cover, suggesting strong interactions of top-down and bottom-up forcing. Nutrient supply by fishes also showed a negative correlation with juvenile coral density, likely mediated by competition between macroalgae and corals, suggesting that fish excretion may hinder coral recovery following large-scale coral loss. Thus, the impact of nutrient supply by fishes may be context-dependent and reinforce either coral-dominant or coral-depauperate reef communities depending on initial community states.

Marine fisheries declines viewed upside down: human impacts on consumer‐driven nutrient recycling

We quantified how two human impacts (overfishing and habitat fragmentation) in nearshore marine ecosystems may affect ecosystem function by altering the role of fish as nutrient vectors. We empirically quantified size-specific excretion rates of one of the most abundant fishes (gray snapper, Lutjanus griseus) in The Bahamas and combined these with surveys of fish abundance to estimate population-level excretion rates. The study was conducted across gradients of two human disturbances: overfishing and ecosystem fragmentation (estuaries bisected by roads), to evaluate how each could result in reduced population-level nutrient cycling by consumers. Mean estimated N and P excretion rates for gray snapper populations were on average 456% and 541% higher, respectively, in unfished sites. Ecosystem fragmentation resulted in significant reductions of recycling rates by snapper, with degree of creek fragmentation explaining 86% and 72% of the variance in estimated excretion for dissolved N and P, respectively. Additionally, we used nutrient limitation assays and primary producer nutrient content to provide a simple example of how marine fishery declines may affect primary production. This study provides an initial step toward integrating marine fishery declines and consumer-driven nutrient recycling to more fully understand the implications of human impacts in marine ecosystems.

Consumers regulate nutrient limitation regimes and primary production in seagrass ecosystems.

Consumer-mediated nutrient supply is increasingly recognized as an important functional process in many ecosystems. Yet, experimentation at relevant spatial and temporal scales is needed to fully integrate this bottom-up pathway into ecosystem models. Artificial reefs provide a unique approach to explore the importance of consumer nutrient supply for ecosystem function in coastal marine environments. We used bioenergetics models to estimate community-level nutrient supply by fishes, and relevant measures of primary production, to test the hypothesis that consumers, via excretion of nutrients, can enhance primary production and alter nutrient limitation regimes for two dominant primary producer groups (seagrass and benthic microalgae) around artificial reefs. Both producer groups demonstrated marked increases in production, as well as shifts in nutrient limitation regimes, with increased fish-derived nutrient supply. Individuals from the two dominant functional feeding groups (herbivores and mesopredators) supplied nutrients at divergent rates and ratios from one another, underscoring the importance of community structure for nutrient supply to primary producers. Our findings demonstrate that consumers, through an underappreciated bottom-up mechanism in marine environments, can alter nutrient limitation regimes and primary production, thereby fundamentally affecting the way these ecosystems function.

Effects of habitat heterogeneity at multiple spatial scales on fish community assembly

Habitat variability at multiple spatial scales may affect community structure within a given habitat patch, even within seemingly homogenous landscapes. In this context, we tested the importance of habitat variables at two spatial scales (patch and landscape) in driving fish community assembly using experimental artificial reefs constructed across a gradient of seagrass cover in a coastal bay of The Bahamas. We found that species richness and benthic fish abundance increased over time, but eventually reached an asymptote. The correlation between habitat variables and community structure strengthened over time, suggesting deterministic processes were detectable in community assembly. Abundance of benthic fishes, as well as overall community structure, were predicted by both patch- and landscape-scale variables, with the cover of seagrass at the landscape-scale emerging as the most important explanatory variable. Results of this study indicate that landscape features can drive differences in community assembly even within a general habitat type (i.e., within seagrass beds). A primary implication of this finding is that human activities driving changes in seagrass cover may cause significant shifts in faunal community structure well before complete losses of seagrass habitat.

Metabolic theory and taxonomic identity predict nutrient recycling in a diverse food web

Significance A fundamental dilemma in ecology is to reconcile the degree to which ecological processes are generalizable among taxa and ecosystems or determined primarily by taxonomic identity. We apply a unique dataset of organisms from a diverse marine community to test the applicability of two theories, metabolic theory of ecology (MTE) and ecological stoichiometry (EST), and the role of taxonomic identity for predicting nutrient excretion rates by fishes and macroinvertebrates. Excretion rates were principally explained by body mass and taxonomic identity, providing strong support for MTE, but also highlighting the intrinsic importance of taxonomic identity. Little support for basic predictions of EST was found. This research reveals animal-mediated nutrient cycling is largely generalizable by metabolic processes, but refined predictions require taxa-specific understanding. Reconciling the degree to which ecological processes are generalizable among taxa and ecosystems, or contingent on the identity of interacting species, remains a critical challenge in ecology. Ecological stoichiometry (EST) and metabolic theory of ecology (MTE) are theoretical approaches used to evaluate how consumers mediate nutrient dynamics and energy flow through ecosystems. Recent theoretical work has explored the utility of these theories, but empirical tests in species-rich ecological communities remain scarce. Here we use an unprecedented dataset collected from fishes and dominant invertebrates (n = 900) in a diverse subtropical coastal marine community (50 families, 72 genera, 102 species; body mass range: 0.04–2,597 g) to test the utility of EST and MTE in predicting excretion rates of nitrogen (EN), phosphorus (EP), and their ratio (ENP). Body mass explained a large amount of the variation in EN and EP but not ENP. Strong evidence in support of the MTE 3/4 allometric scaling coefficient was found for EP, and for EN only after accounting for variation in excretion rates among taxa. In all cases, including taxonomy in models substantially improved model performance, highlighting the importance of species identity for this ecosystem function. Body nutrient content and trophic position explained little of the variation in EN, EP, or ENP, indicating limited applicability of basic predictors of EST. These results highlight the overriding importance of MTE for predicting nutrient flow through organisms, but emphasize that these relationships still fall short of explaining the unique effects certain species can have on ecological processes.

Thresholds of ecosystem response to nutrient enrichment from fish aggregations

Biogeochemical hotspots can be driven by aggregations of animals, via excretion, that provide a concentrated source of limiting nutrients for primary producers. In a subtropical seagrass ecosystem, we characterized thresholds of ecological change associated with such hotspots surrounding artificial reef habitats. We deployed reefs of three sizes to aggregate fishes at different densities (and thus different levels of nutrient supply via excretion) and examined seagrass characteristics that reflect ecosystem processes. Responses varied as a function of reef size, with higher fish densities (on larger reefs) associated with more distinct ecological thresholds. For example, adjacent to larger reefs, the percentage of P content (%P) of seagrass (Thalassia testudinum) blades was significantly higher than background concentrations; fish densities on smaller reefs were insufficient to support sharp transitions in %P. Blade height was the only variable characterized by thresholds adjacent to smaller reefs, but lower fish densities (and hence, nutrient input) on smaller reefs were not sufficient for luxury nutrient storage by seagrass. Identifying such complexities in ecological thresholds is crucial for characterizing the extent to which biogeochemical hotspots may influence ecosystem function at a landscape scale.

Consistent nutrient storage and supply mediated by diverse fish communities in coral reef ecosystems

Corals thrive in low nutrient environments and the conservation of these globally imperiled ecosystems is largely dependent on mitigating the effects of anthropogenic nutrient enrichment. However, to better understand the implications of anthropogenic nutrients requires a heightened understanding of baseline nutrient dynamics within these ecosystems. Here, we provide a novel perspective on coral reef nutrient dynamics by examining the role of fish communities in the supply and storage of nitrogen (N) and phosphorus (P). We quantified fish-mediated nutrient storage and supply for 144 species and modeled these data onto 172 fish communities (71 729 individual fish), in four types of coral reefs, as well as seagrass and mangrove ecosystems, throughout the Northern Antilles. Fish communities supplied and stored large quantities of nutrients, with rates varying among ecosystem types. The size structure and diversity of the fish communities best predicted N and P supply and storage and N : P supply, suggesting that alterations to fish communities (e.g., overfishing) will have important implications for nutrient dynamics in these systems. The stoichiometric ratio (N : P) for storage in fish mass (~8 : 1) and supply (~20 : 1) was notably consistent across the four coral reef types (but not seagrass or mangrove ecosystems). Published nutrient enrichment studies on corals show that deviations from this N : P supply ratio may be associated with poor coral fitness, providing qualitative support for the hypothesis that corals and their symbionts may be adapted to specific ratios of nutrient supply. Consumer nutrient stoichiometry provides a baseline from which to better understand nutrient dynamics in coral reef and other coastal ecosystems, information that is greatly needed if we are to implement more effective measures to ensure the future health of the worlds oceans.

Foraging choices of vampire bats in diverse landscapes: potential implications for land‐use change and disease transmission

Summary In Latin America, the common vampire bat Desmodus rotundus is the primary reservoir of rabies, a zoonotic virus that kills thousands of livestock annually and causes sporadic and lethal human rabies outbreaks. The proliferation of livestock provides an abundant food resource for this obligate blood‐feeding species that could alter its foraging behaviour and rabies transmission, but poor understanding of the dietary plasticity of vampire bats limits understanding of how livestock influences rabies risk. We analysed individual‐ and population‐level foraging behaviour by applying δ13C and δ15N stable isotope analysis to hair samples from 183 vampire bats captured from nine colonies in Peru. We also assessed the isotopic distributions of realized prey by analysing blood meals extracted from engorged bats and samples collected from potential prey species. In two adjacent but contrasting areas of the Amazon with scarce and abundant livestock, we used questionnaires to evaluate the incidence of feeding on humans. Population‐level isotopic signatures suggested substantial among‐site variation in feeding behaviour, including reliance on livestock in some colonies and feeding on combinations of domestic and wild prey in others. Isotopic heterogeneity within bat colonies was among the largest recorded in vertebrate populations, indicating that individuals consistently fed on distinct prey resources and across distinct trophic levels. In some sites, isotopic values of realized prey spanned broad ranges, suggesting that bats with intermediate isotopic values could plausibly be dietary specialists rather than generalists. Bayesian estimates of isotopic niche width varied up to ninefold among colonies and were maximized where wildlife and livestock were present at low levels, but declined with greater availability of livestock. In the Amazon, the absence of livestock was associated with feeding on humans and wildlife. Policy implications. We provide the first insights into the foraging behaviour of vampire bats in habitats with common depredation on humans and show how vampire bat foraging may respond to land‐use change. Our results demonstrate risks of rabies transmission from bats to other wildlife and are consistent with the hypothesis that introducing livestock might reduce the burden of human rabies in high‐risk communities.

Linking fish colonization rates and water level change in littoral habitats of a Venezuelan floodplain river

Change in water level during the annual hydrologic cycle of tropical floodplain rivers results in continuous disassembly and reassembly of faunal communities in littoral habitat patches. As such, the rate of water level change should influence colonization rates of vagile organisms among habitat patches. We experimentally tested this hypothesis in a Venezuela floodplain river using artificial rocky patches as sampling units, water level change as the independent variable, and total number of individual fish that colonized a patch as the response variable. Water level significantly affected the total number of individuals that colonized patch habitats, i.e., rapidly receding waters were associated with higher colonization rates. Results suggest that water-level recession directly affects community assembly by influencing the rate at which individuals abandon and colonize local habitat patches.