James L. Congleton

Developing a broader scientific foundation for river restoration: Columbia River food webs

Well-functioning food webs are fundamental for sustaining rivers as ecosystems and maintaining associated aquatic and terrestrial communities. The current emphasis on restoring habitat structure—without explicitly considering food webs—has been less successful than hoped in terms of enhancing the status of targeted species and often overlooks important constraints on ecologically effective restoration. We identify three priority food web-related issues that potentially impede successful river restoration: uncertainty about habitat carrying capacity, proliferation of chemicals and contaminants, and emergence of hybrid food webs containing a mixture of native and invasive species. Additionally, there is the need to place these food web considerations in a broad temporal and spatial framework by understanding the consequences of altered nutrient, organic matter (energy), water, and thermal sources and flows, reconnecting critical habitats and their food webs, and restoring for changing environments. As an illustration, we discuss how the Columbia River Basin, site of one of the largest aquatic/riparian restoration programs in the United States, would benefit from implementing a food web perspective. A food web perspective for the Columbia River would complement ongoing approaches and enhance the ability to meet the vision and legal obligations of the US Endangered Species Act, the Northwest Power Act (Fish and Wildlife Program), and federal treaties with Northwest Indian Tribes while meeting fundamental needs for improved river management.

Stress Indices in Migrating Juvenile Chinook Salmon and Steelhead of Wild and Hatchery Origin before and after Barge Transportation

Abstract Migrating wild (W) and hatchery-reared (H) chinook salmon Oncorhynchus tshawytscha and steelhead Oncorhynchus mykiss juveniles were sampled after loading into fish-transport barges at Lower Granite Dam on the Snake River, Washington, and after barge transportation downstream to Bonneville Dam on the Columbia River. Stress indices (increased plasma cortisol and glucose concentrations and decreased plasma chloride concentrations) were higher (P < 0.001) for chinook salmon sampled during midseason (early to mid-May), when fish loading densities in barges were at seasonal maximums, than were stress indices for those sampled earlier or later. Cortisol concentrations in chinook salmon were correlated with steelhead densities after loading of barges (P < 0.0001, R 2 = 0.41) and after arrival of barges at Bonneville Dam (P < 0.0001, R 2 = 0.65). Cortisol concentrations were not correlated with gill Na+, K+–adenosine triphosphatase activities, which were higher in W than in H fish of both species. Cortiso...

SURVIVAL AND SELECTION OF MIGRATING SALMON FROM CAPTURE-RECAPTURE MODELS WITH INDIVIDUAL TRAITS

Capture-recapture studies are powerful tools for studying animal population dynamics, providing information on population abundance, survival rates, population growth rates, and selection for phenotypic traits. In these studies, the probability of ob- serving a tagged individual reflects both the probability of the individual surviving to the time of recapture and the probability of recapturing an animal, given that it is alive. If both of these probabilities are related to the same phenotypic trait, it can be difficult to distinguish effects on survival probabilities from effects on recapture probabilities. However, when animals are individually tagged and have multiple opportunities for recapture, we can properly partition observed trait-related variability into survival and recapture components. We present an overview of capture-recapture models that incorporate individual variability and develop methods to incorporate results from these models into estimates of population survival and selection for phenotypic traits. We conducted a series of simulations to un- derstand the performance of these estimators and to assess the consequences of ignoring individual variability when it exists. In addition, we analyzed a large data set of > 153 000 juvenile chinook salmon (Oncorhynchus tshawytscha) and steelhead (0. mykiss) of known length that were PIT-tagged during their seaward migration. Both our simulations and the case study indicated that the ability to precisely estimate selection for phenotypic traits was greatly compromised when differential recapture probabilities were ignored. Estimates of population survival, however, were far more robust. In the chinook salmon and steelhead study, we consistently found that smaller fish had a greater probability of recapture. We also uncovered length-related survival relationships in over half of the release group/river segment combinations that we observed, but we found both positive and negative rela- tionships between length and survival probability. These results have important implications for the management of salmonid populations.

Effects of Sediment Cover on Survival and Development of White Sturgeon Embryos

Abstract A simple, inexpensive apparatus (embryo incubation unit (EIU)) was developed and used to assess the relationship between sediment cover (Kootenai River sediments, 97% by weight in the 0.83-mm- to 1.0-mm-diameter range) and survival of white sturgeon Acipenser transmontanus embryos in the laboratory. An apparatus-testing trial assessed the effects of two sediment depths (5 and 20 mm), three EIU ventilation hole sizes (4.8, 6.8, and 9.5 mm) providing three levels of intrasediment flow, and EIU location (upstream or downstream in laboratory troughs) on embryo survival at two above-substrate flow velocities (0.05 and 0.15 m/s). A second trial assessed the effects of sediment cover duration (5-mm sediment cover for 4, 7, 9, 11, or 14 d, with a ventilation hole size of 9.5 mm and a flow velocity of 0.17 m/s) on mean embryo survival and larval length and weight. In the apparatus-testing trial, embryo survival was reduced (P < 0.0001) to 0–5% under sediment covers of either 5 or 20 mm in both the higher-...

Comparison of Blood Chemistry Values for Samples Collected from Juvenile Chinook Salmon by Three Methods

Abstract Thirteen blood chemistry indices were compared for samples collected by three commonly used methods: caudal transection, heart puncture, and caudal vessel puncture. Apparent biases in blood chemistry values for samples obtained by caudal transection were consistent with dilution with tissue fluids: alanine aminotransferase (ALT), aspartate aminotransferase (AST), lactate dehydrogenase (LDH), creatine kinase (CK), triglyceride, and K+ were increased and Na+ and Cl− were decreased relative to values for samples obtained by caudal vessel puncture. Some enzyme activities (ALT, AST, LDH) and K+ concentrations were also greater in samples taken by heart puncture than in samples taken by caudal vessel puncture. Of the methods tested, caudal vessel puncture had the least effect on blood chemistry values and should be preferred for blood chemistry studies on juvenile salmonids.

Effects of current velocity on development and survival of lingcod, Ophiodon elongatus, embryos

SynopsisThe influence of current velocity on the survival and development of lingcod embryos was investigated in the field and laboratory. Examination of egg masses at five lingcod spawning sites indicated that embryo mortalities were high (up to 95%) at low-current sites because of inadequate ventilation and resulting hypoxia. Development of embryos near the center of poorly ventilated egg masses was retarded relative to development of embryos near the periphery. Hatching of embryos from poorly ventilated eggs was protracted; embryos from the interior of egg masses hatched later and were significantly smaller than embryos from eggs near the periphery. Oxygen levels measured in egg masses at low-current velocity sites during tidal flow average 16% air saturation, corresponding to a Median Tolerance Limit (LT50) of about 73 h. Oxygen levels measured in egg masses at high-current velocity sites during slack water average 69% air saturation, a level that did not adversely affect the embryos. Current velocities of 10–15 cm s−1 were needed to maintain interstitial oxygen levels in egg masses near that of the ambient water. Water movement may be an important stimulus for spawning site selection by lingcod. In areas where tidal currents were weak, spawn deposition occurred in shallow water where waves and vertical tide motion created water movement. In areas where tidal currents were strong, spawns were consistently deposited in deeper water.

A Comprehensive Approach for Habitat Restoration in the Columbia Basin

The Columbia Basin once supported a diversity of native fishes and large runs of anadromous salmonids that sustained substantial fisheries and cultural values. Extensive land conversion, watershed disruptions, and subsequent fishery declines have led to one of the most ambitious restoration programs in the world. Progress has been made, but restoration is expensive (exceeding US

Effects of Juvenile Steelhead on Juvenile Chinook Salmon Behavior and Physiology

300M/year), and it remains unclear whether habitat actions, in particular, can be successful. A comprehensive approach is needed to guide cost-effective habitat restoration. Four elements that must be addressed simultaneously are (1) a scientific foundation from landscape ecology and the concept of resilience, (2) broad public support, (3) governance for collaboration and integration, and (4) a capacity for learning and adaptation. Realizing these in the Columbia Basin will require actions to rebalance restoration goals to include diversity, strengthen linkages between science and management, increase public engagement, work acros...

Bactericidal activity of juvenile chinook salmon macrophages against Aeromonas salmonicida after exposure to live or heat-killed Renibacterium salmoninarum or to soluble proteins produced by R. salmoninarum.

Abstract Experiments were designed to determine whether and how steelhead Oncorhynchus mykiss affect chinook salmon O. tshawytscha when the two species are confined together. In a behavioral experiment, we observed groups of juvenile chinook salmon and steelhead together and groups of chinook salmon alone to determine whether the steelhead were aggressive and their presence changed the behavior of chinook salmon. We also performed two runs of a physiological experiment to determine whether the addition of steelhead to tanks containing chinook salmon would stress the chinook salmon, as determined by a change in their plasma cortisol levels. Behavioral changes were observed in the chinook salmon when they were held with steelhead; they reduced their movements, darted less, were attacked up to 16 times as often, and were found less frequently in the shade than chinook salmon held without steelhead. Steelhead were found to establish territories and defend them with chases, charges, and nips. In their attempts...

Detection of Infectious Hematopoietic Necrosis (IHN) Virus in Rearing Units for Steelhead before and during IHN Epizootics

Abstract Macrophages isolated from the anterior kidney of juvenile chinook salmon Oncorhynchus tshawytscha in 96-well microtiter plates were exposed for 72 h to 0, 105, or 106 live or heat-killed Renibacterium salmoninarum cells per well or to 0, 0.1, 1.0, or 10 μg/mL of R. salmoninarum soluble proteins. After treatment, the bactericidal activity of the macrophages against Aeromonas salmonicida was determined by a colorimetric assay based on the reduction of the tetrazolium dye MTT to formazan by viable bacteria. The MTT assay was modified to allow estimation of the percentage of bacteria killed by reference to a standard curve relating the number of bacteria added to microtiter wells to absorbance by formazan at 600 nm. The live and heatkilled R. salmoninarum treatments significantly (P < 0.001) increased killing of A. salmonicida by chinook salmon macrophages. In each of the five trials, significantly (P < 0.05) greater increases in killing occurred after exposure to 105 R. salmoninarum cells than to 10...