James Moloney

Wet-season effects on the distribution of juvenile pigeye sharks, Carcharhinus amboinensis, in tropical nearshore waters

Tropical nearshore environments are highly dynamic systems owing to extreme freshwater flow and flooding episodes that occur in wet-season months. We hypothesised that juvenile sharks in tropical nearshore waters respond to seasonal freshwater inflow by moving away from areas of strong flow. An array of fifty-eight acoustic receivers deployed in Cleveland Bay, north Queensland, Australia, passively tracked thirty-two juvenile pigeye sharks, Carcharhinus amboinensis, throughout two wet seasons from 2008 to 2010. Influences associated with wet seasons appeared to play a role in habitat use by juvenile C. amboinensis in this region. Home ranges and distribution of individuals showed distinct changes, with individuals moving north away from sources of freshwater inflow during high flows. The location of individuals within the bay was strongly influenced by freshwater inflow in both years. Although juvenile C. amboinensis moved in response to freshwater inflow, home-range sizes remained stable, and the amount of space individuals used did not change in relation to freshwater inflow. By defining the response of juvenile sharks to highly variable freshwater flow events, this research provides useful information for understanding species behaviour in a dynamic and changing climate, and contributes towards effective management of tropical river systems.

Rezoning of the Great Barrier Reef World Heritage Area: does it afford greater protection for marine turtles?

In 2004 the Australian Government implemented a revised zone-based management plan for the Great Barrier Reef World Heritage Area to increase protection of representative areas while minimising the impacts to the economic viability of important industries. In this study we evaluated the current zoning plan for its capacity to protect marine turtles from commercial trawling and netting activities at nesting sites and at inshore and offshore foraging areas to assess whether the Great Barrier Reef Marine Park Authority met their obligations under the Representative Areas Program (RAP). We found that protection from commercial fisheries increased within 5- and 10-km buffer zones of all very-high, high- and medium-priority nesting sites that were previously less than 100% protected. However, three very-high-priority sites and six high-priority sites remain less than 100% protected out to 5 km, falling short of the objectives of the RAP. There were variable increases in protection at foraging areas; however, each of them increased in the proportion of area protected from commercial fishing, fulfilling the objectives of the RAP. By using a broader-scale fisheries by-catch dataset as a proxy for turtle abundance we found that improvements in protection are not species-specific and can be attributed to the step-wise increases in protection since the mid 1990s.

First evidence of spatial clustering of lymphatic filariasis in an Aedes polynesiensis endemic area

Successful elimination of lymphatic filariasis (LF) requires accurate identification of residual foci of transmission and stringent surveillance strategies to combat potential resurgence. This is challenging in areas where the day-biting Aedes polynesiensis is endemic, such as Samoa, since in previous studies no geographical clustering of infection has been demonstrated. Another challenge for this low prevalence phase is the choice of diagnostic assay as testing for circulating filarial antigen (CFA) or microfilariae (Mf) alone may not have adequate sensitivity. This could be solved by using the commercially available filariasis Cellabs enzyme linked immunosorbent assay (CELISA) to measure antibody. In the current study five Samoan villages were chosen based on previous epidemiological assessments to represent a range of infection prevalences. CFA, Mf, and antibody levels in children ≤ 10 years had been recorded and results linked to household of residence and/or primary school of attendance. To ascertain the location of exposure, two scenarios based on potential foci of transmission around communities and schools were explored. Both scenarios revealed significant spatial clusters of households with infected individuals and a relationship to antibody positive children when they were included in the spatial analysis. Fasitoo-Tai had the highest LF prevalence and largest geographical spatial clusters for both scenarios. In Falefa, spatial clusters were detected only for the primary school scenario. In Tafua, which spanned an area of 19.5 km(2), no spatial clusters were detected. Lastly, in Siufaga, the village with the lowest LF prevalence, significant clustering of infected individuals was observed and, for the primary school scenario, this was geographically related to exposure. These promising findings are the first published evidence of spatial clustering of LF in a day-biting Ae. polynesiensis endemic area.

Simulation modelling of Aedes aegypti prevalence, an environmental hazard surveillance tool for the control of dengue epidemics

We performed a five-year simulation of Aedes aegypti population dynamics in Townsville, Queensland to better understand local Ae. aegypti ecology and thus improve the potential effectiveness of interventions aimed at dengue control. Using the Container Inhabiting Mosquito Simulation Model (CIMSiM), public health interventions can use a wealth of environmental knowledge about Ae. aegypti, a disease vector hazard, towards its surveillance. We conducted larval surveys to initialise the simulation of Ae. aegypti prevalence and parameterise Townsvilles artificial container habitats. Our simulations indicate (1) a seasonal, but stable Ae. aegypti prevalence, (2) the importance of bromeliads, striking vases, pot plant bases and car tire containers as breeding sources and (3) the potential effectiveness of breeding container source reduction and pesticide space spraying. Although it is unlikely that simulation modelling will ever be used to forecast impending dengue epidemics, the limitations of modelling do not preclude their role in environmental health programs aimed at improving the effectiveness of available interventions.

Sympathy for the devil: detailing the effects of planning-unit size, thematic resolution of reef classes, and socioeconomic costs on spatial priorities for marine conservation

Spatial data characteristics have the potential to influence various aspects of prioritising biodiversity areas for systematic conservation planning. There has been some exploration of the combined effects of size of planning units and level of classification of physical environments on the pattern and extent of priority areas. However, these data characteristics have yet to be explicitly investigated in terms of their interaction with different socioeconomic cost data during the spatial prioritisation process. We quantify the individual and interacting effects of three factors—planning-unit size, thematic resolution of reef classes, and spatial variability of socioeconomic costs—on spatial priorities for marine conservation, in typical marine planning exercises that use reef classification maps as a proxy for biodiversity. We assess these factors by creating 20 unique prioritisation scenarios involving combinations of different levels of each factor. Because output data from these scenarios are analogous to ecological data, we applied ecological statistics to determine spatial similarities between reserve designs. All three factors influenced prioritisations to different extents, with cost variability having the largest influence, followed by planning-unit size and thematic resolution of reef classes. The effect of thematic resolution on spatial design depended on the variability of cost data used. In terms of incidental representation of conservation objectives derived from finer-resolution data, scenarios prioritised with uniform cost outperformed those prioritised with variable cost. Following our analyses, we make recommendations to help maximise the spatial and cost efficiency and potential effectiveness of future marine conservation plans in similar planning scenarios. We recommend that planners: employ the smallest planning-unit size practical; invest in data at the highest possible resolution; and, when planning across regional extents with the intention of incidentally representing fine-resolution features, prioritise the whole region with uniform costs rather than using coarse-resolution data on variable costs.

Movement Patterns, Home Range Size and Habitat Selection of an Endangered Resource Tracking Species, the Black-Throated Finch (Poephila cincta cincta)

Understanding movement patterns and home range of species is paramount in ecology; it is particularly important for threatened taxa as it can provide valuable information for conservation management. To address this knowledge gap for a range-restricted endangered bird, we estimated home range size, daily movement patterns and habitat use of a granivorous subspecies in northeast Australia, the black-throated finch (Poephila cincta cincta; BTF) using radio-tracking and re-sighting of colour banded birds. Little is known about basic aspects of its ecology including movement patterns and home range sizes. From 2011–2014 we colour-banded 102 BTF and radio-tracked 15 birds. We generated home ranges (calculated using kernel and Minimum Convex Polygons techniques of the 15 tracked BTF). More than 50% of the re-sightings occurred within 200 m of the banding site (n = 51 out of 93 events) and within 100 days of capture. Mean home-range estimates with kernel (50%, 95% probability) and Minimum Convex Polygons were 10.59 ha, 50.79 ha and 46.27 ha, respectively. Home range size differed between two capture sites but no seasonal differences were observed. BTF home ranges overlapped four habitat types among eight available. Habitat selection was different from random at Site 1 (χ2 = 373.41, df = 42, p<0.001) and Site 2 (χ2 = 1896.1, df = 45, p<0.001); however, the preferred habitats differed between the two sites. BTF moved further than expected on the basis of current knowledge, with three individuals being resighted over 15 km from the banding location. However, BTF maintain small home ranges over short time-frames. Occasional long-distance movements may be related to resource bottleneck periods. Daily movement patterns differed between sites, which is likely linked to the fact that the sites differ in the spatial distribution of resources. The work provides information about home range sizes and local movement of BTF that will be valuable for targeting effective management and conservation strategies for this endangered granivore.

Nearshore movement ecology of a medium-bodied shark, the creek whaler Carcharhinus fitzroyensis

BackgroundThe movement and habitat use patterns of medium-bodied nearshore sharks are poorly understood. However, these species face some of the highest levels of exposure to anthropogenic development. The habitat and space use strategies species exhibit affect their role within communities and how they respond to environmental change. The present study used passive acoustic telemetry to evaluate the residency, space use, and habitat use patterns of the creek whaler Carcharhinus fitzroyensis in a nearshore embayment in Queensland, Australia.ResultsIndividuals were monitored for approximately 18 months. Half of the monitored population were highly resident to the bay. In contrast, several individuals spent less than 2 weeks in the bay, suggesting that broader movements may occur in a portion of the population. Size had no effect on residency. Activity space size varied between months and time of day but was also not affected by animal size. All C. fitzroyensis spent the majority of time in seagrass habitat (70%) and deep water (>5 m) mud substrate (20%). Shallow mudflat, sandy inshore, and reef habitats were rarely used (7%). Although the sample size of immature individuals was relatively small, results indicated immature and mature C. fitzroyensis shared space and habitats.ConclusionsOverall, C. fitzroyensis used a combination of nearshore movement patterns typically exhibited by small- and large-bodied species. The movement patterns exhibited by C. fitzroyensis suggest that this species has a moderately high degree of seagrass habitat specialisation. Seagrass habitat is typically highly productive and may be an important foraging habitat for this species. Given the consistent use of seagrass habitat, C. fitzroyensis are likely vulnerable to population decline as a result of seagrass habitat loss. Future research should continue to investigate the unique movements of medium-bodied sharks.

Genetic structure and diversity of the black-throated finch (Poephila cincta) across its current range

Abstract. Understanding the patterns of population connectivity and level of genetic diversity can facilitate the identification of both ecologically relevant populations and the spatial scales at which conservation management may need to focus. We quantified genetic variation within and among populations of black-throated finches across their current distribution. To quantify genetic structure and diversity, we genotyped 242 individuals from four populations using 14 polymorphic microsatellite markers and sequenced 25 individuals based on a 302-base-pair segment of mitochondrial control region. We found modest levels of genetic diversity (average allelic richness r = 4.37 ± 0.41 (standard error) and average heterozygosity HO = 0.42 ± 0.040 (standard error)) with no bottleneck signature among sampled populations. We identified two genetic groups that represent populations of two subspecies based on Bayesian clustering analysis and low levels of genetic differentiation based on pairwise genetic differentiation statistics (all FST, RST and Nei’s unbiased D values < 0.1). Our data suggest that genetic exchange occurs among sampled populations despite recent population declines. Conservation efforts that focus on maintaining habitat connectivity and increasing habitat quality to ensure a high level of gene flow on a larger scale will improve the species’ ability to persist in changing landscapes. Conservation management should also support continuous monitoring of the bird to identify any rapid population declines as land-use intensification occurs throughout the species’ range.