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Featured researches published by James R. Lyons.


The Astrophysical Journal | 2016

CARBON DIOXIDE IN EXOPLANETARY ATMOSPHERES: RARELY DOMINANT COMPARED TO CARBON MONOXIDE AND WATER IN HOT, HYDROGEN-DOMINATED ATMOSPHERES

Kevin Heng; James R. Lyons

We present a comprehensive study of the abundance of carbon dioxide in exoplanetary atmospheres. We construct analytical models of systems in chemical equilibrium that include carbon monoxide, carbon dioxide, water, methane and acetylene and relate the equilibrium constants of the chemical reactions to temperature and pressure via the tabulated Gibbs free energies. We prove that such chemical systems may be described by a quintic equation for the mixing ratio of methane. By examining the abundances of these molecules across a broad range of temperatures (spanning equilibrium temperatures from 600 to 2500 K), pressures (via temperature-pressure profiles that explore albedo and opacity variations) and carbon-to-oxygen ratios (from 0.1 to 100), we conclude that carbon dioxide is subdominant compared to carbon monoxide and water. Atmospheric mixing does not alter this conclusion if carbon dioxide is subdominant everywhere in the atmosphere. Carbon dioxide and carbon monoxide may attain comparable abundances if the metallicity is greatly enhanced, but this property is negated by temperatures above 1000 K. For hydrogen-dominated atmospheres, our generic result has the implication that retrieval studies need to set the subdominance of carbon dioxide as a prior of the calculation and not let its abundance completely roam free as a fitting parameter, because it directly affects the inferred value of the carbon-to-oxygen ratio and may produce unphysical conclusions. We discuss the relevance of these implications for the hot Jupiter WASP-12b and suggest that some of the previous results are chemically impossible. The relative abundance of carbon dioxide to acetylene is potentially a sensitive diagnostic of the carbon-to-oxygen ratio.


Proceedings of the National Academy of Sciences of the United States of America | 2014

Early inner solar system origin for anomalous sulfur isotopes in differentiated protoplanets

Michael A. Antonelli; Marc Peters; Jabrane Labidi; Pierre Cartigny; Richard J. Walker; James R. Lyons; Joost Hoek; James Farquhar

Significance This investigation focuses on the sulfur isotopic compositions of magmatically differentiated meteorites, the oldest igneous rocks in our solar system. We present evidence of anomalous 33S depletions in a group of differentiated iron meteorites, along with 33S enrichments in several other groups. The complementary positive and negative compositions, along with observed covariations in 36S and 33S, are explained by Lyman-α photolysis of gaseous H2S in the solar nebula. Confirmation of photochemically predicted 33S depletions implies that the starting composition of inner solar system sulfur was chondritic, consistent with the Earth, Moon, Mars, and nonmagmatic iron meteorites. Differentiated protoplanets, however, appear to have accreted from materials processed under conditions where sulfur was volatile and UV radiation was present (<∼2 AU). Achondrite meteorites have anomalous enrichments in 33S, relative to chondrites, which have been attributed to photochemistry in the solar nebula. However, the putative photochemical reactions remain elusive, and predicted accompanying 33S depletions have not previously been found, which could indicate an erroneous assumption regarding the origins of the 33S anomalies, or of the bulk solar system S-isotope composition. Here, we report well-resolved anomalous 33S depletions in IIIF iron meteorites (<−0.02 per mil), and 33S enrichments in other magmatic iron meteorite groups. The 33S depletions support the idea that differentiated planetesimals inherited sulfur that was photochemically derived from gases in the early inner solar system (<∼2 AU), and that bulk inner solar system S-isotope composition was chondritic (consistent with IAB iron meteorites, Earth, Moon, and Mars). The range of mass-independent sulfur isotope compositions may reflect spatial or temporal changes influenced by photochemical processes. A tentative correlation between S isotopes and Hf-W core segregation ages suggests that the two systems may be influenced by common factors, such as nebular location and volatile content.


Astrophysical Journal Supplement Series | 2017

VULCAN: An Open-source, Validated Chemical Kinetics Python Code for Exoplanetary Atmospheres

Shang-Min Tsai; James R. Lyons; Luc Grosheintz; Paul B. Rimmer; Daniel Kitzmann; Kevin Heng

We present an open-source and validated chemical kinetics code for studying hot exoplanetary atmospheres, which we name VULCAN. It is constructed for gaseous chemistry from 500 to 2500 K using a reduced C-H-O chemical network with about 300 reactions. It uses eddy diffusion to mimic atmospheric dynamics and excludes photochemistry. We have provided a full description of the rate coefficients and thermodynamic data used. We validate VULCAN by reproducing chemical equilibrium and by comparing its output versus the disequilibrium-chemistry calculations of Moses et al. and Rimmer & Helling. It reproduces the models of HD 189733b and HD 209458b by Moses et al., which employ a network with nearly 1600 reactions. We also use VULCAN to examine the theoretical trends produced when the temperature-pressure profile and carbon-to-oxygen ratio are varied. Assisted by a sensitivity test designed to identify the key reactions responsible for producing a specific molecule, we revisit the quenching approximation and find that it is accurate for methane but breaks down for acetylene, because the disequilibrium abundance of acetylene is not directly determined by transport-induced quenching, but is rather indirectly controlled by the disequilibrium abundance of methane. Therefore, we suggest that the quenching approximation should be used with caution and must always be checked against a chemical kinetics calculation. A one-dimensional model atmosphere with 100 layers, computed using VULCAN, typically takes several minutes to complete. VULCAN is part of the Exoclimes Simulation Platform (ESP; this http URL) and publicly available at this http URL .


Proceedings of the National Academy of Sciences of the United States of America | 2013

Reply to Miller: Concerning the oxygen isotope anomaly observed in water vapor from Alert, Canada, and its stratospheric source

Ying Lin; Robert N. Clayton; Lin Huang; Noboru Nakamura; James R. Lyons

In this work, we justify our use of Chicago local precipitation (CLP) as a reference and reinforce our confidence in the anomalous oxygen isotope signal in water from the stratosphere, as a response to a recent critique from Miller (1).


The Astrophysical Journal | 2018

Toward Consistent Modeling of Atmospheric Chemistry and Dynamics in Exoplanets: Validation and Generalization of the Chemical Relaxation Method

Shang-Min Tsai; Daniel Kitzmann; James R. Lyons; João Mendonça; Simon L. Grimm; Kevin Heng

Motivated by the work of Cooper & Showman, we revisit the chemical relaxation method, which seeks to enhance the computational efficiency of chemical-kinetics calculations by replacing the chemical network with a handful of independent source/sink terms. Chemical relaxation solves the evolution of the system and can treat disequilibrium chemistry, as the source/sink terms are driven towards chemical equilibrium on a prescribed chemical timescale, but it has surprisingly never been validated. First, we generalize the treatment by forgoing the use of a single chemical timescale, instead developing a pathway analysis tool that allows us to identify the rate-limiting reaction as a function of temperature and pressure. For the interconversion between methane and carbon monoxide and between ammonia, and molecular nitrogen, we identify the key rate-limiting reactions for conditions relevant to currently characterizable exo-atmospheres (500-3000 K, 0.1 mbar to 1 kbar). Second, we extend chemical relaxation to include carbon dioxide and water. Third, we examine the role of metallicity and carbon-to-oxygen ratio in chemical relaxation. Fourth, we apply our pathway analysis tool to diagnose the differences between our chemical network and that of Moses and Venot. Finally, we validate the chemical relaxation method against full chemical kinetics calculations in one dimension. For WASP-18b-, HD 189733b- and GJ 1214-b-like atmospheres, we show that chemical relaxation is mostly accurate to within an order of magnitude, a factor of 2 and


Nature Communications | 2018

A light carbon isotope composition for the Sun

James R. Lyons; Ehsan Gharib-Nezhad; Thomas R. Ayres

\sim 10\%


The Astrophysical Journal | 2016

ATMOSPHERIC CHEMISTRY FOR ASTROPHYSICISTS: A SELF-CONSISTENT FORMALISM AND ANALYTICAL SOLUTIONS FOR ARBITRARY C/O

Kevin Heng; James R. Lyons; Shang-Min Tsai

, respectively. The level of accuracy attained allows for the chemical relaxation method to be included in three-dimensional general circulation models.


Proceedings of the National Academy of Sciences of the United States of America | 2013

Oxygen isotope anomaly observed in water vapor from Alert, Canada and the implication for the stratosphere

Ying Lin; Robert N. Clayton; Lin Huang; Noboru Nakamura; James R. Lyons

Measurements by the Genesis mission have shown that solar wind oxygen is depleted in the rare isotopes, 17O and 18O, by approximately 80 and 100‰, respectively, relative to Earth’s oceans, with inferred photospheric values of about −60‰ for both isotopes. Direct astronomical measurements of CO absorption lines in the solar photosphere have previously yielded a wide range of O isotope ratios. Here, we reanalyze the line strengths for high-temperature rovibrational transitions in photospheric CO from ATMOS FTS data, and obtain an 18O depletion of δ18O = −50 ± 11‰ (1σ). From the same analysis we find a carbon isotope ratio of δ13C = −48 ± 7‰ (1σ) for the photosphere. This implies that the primary reservoirs of carbon on the terrestrial planets are enriched in 13C relative to the bulk material from which the solar system formed, possibly as a result of CO self-shielding or inheritance from the parent cloud.The Sun’s light stable isotopes compositions can help us understand how our solar system formed. Here, the authors find that solar C is depleted relative to bulk Earth indicating that the 13C enrichment of the terrestrial planets is from CO self-shielding or inheritance from the parent cloud.


arXiv: Earth and Planetary Astrophysics | 2016

The Need for Laboratory Work to Aid in The Understanding of Exoplanetary Atmospheres

Jonathan J. Fortney; Tyler D. Robinson; Shawn D. Domagal-Goldman; David S. Amundsen; M. Brogi; Mark W. Claire; David Crisp; Eric Hébrard; Hiroshi Imanaka; Remco J. de Kok; Mark S. Marley; Dillon Teal; Travis S. Barman; Peter F. Bernath; Adam Burrows; David Charbonneau; Richard S. Freedman; Dawn M. Gelino; Christiane Helling; Kevin Heng; Adam G. Jensen; Stephen R. Kane; Eliza Miller-Ricci Kempton; R. Kopparapu; Nikole K. Lewis; Mercedes Lopez-Morales; James R. Lyons; Wladimir Lyra; Victoria S. Meadows; Julianne I. Moses


Archive | 2005

Reconciling isotope effects of SO2 photolysis with the Archean record of sulfur multiple isotopes

Boswell A. Wing; James R. Lyons; Shuhei Ono; James Farquhar; Ian R. Jonasson; Alan J. Kaufman

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Thomas R. Ayres

University of Colorado Boulder

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