Jan Alster
Charles University in Prague
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Featured researches published by Jan Alster.
Journal of Physical Chemistry B | 2014
Jan Alster; Heiko Lokstein; Jakub Dostál; Akira Uchida; Donatas Zigmantas
Water-soluble chlorophyll-binding proteins (WSCPs) are interesting model systems for the study of pigment-pigment and pigment-protein interactions. While class IIa WSCP has been extensively studied by spectroscopic and theoretical methods, a comprehensive spectroscopic study of class IIb WSCP was lacking so far despite the fact that its structure was determined by X-ray crystallography. In this paper, results of two-dimensional electronic spectroscopy applied to the class IIb WSCP from Lepidium virginicum are presented. Global analysis of 2D data allowed determination of energy levels and excitation energy transfer pathways in the system. Some additional pathways, not present in class IIa WSCP, were observed. The data were interpreted in terms of a model comprising two interacting chlorophyll dimers. In addition, oscillatory signals were observed and identified as coherent beatings of vibrational origin.
Biochimica et Biophysica Acta | 2016
Zuzana Kvíčalová; Jan Alster; Eckhard Hofmann; Petro Khoroshyy; Radek Litvín; David Bína; Tomáš Polívka; Jakub Pšenčík
Room temperature transient absorption spectroscopy with nanosecond resolution was used to study quenching of the chlorophyll triplet states by carotenoids in two light-harvesting complexes of the dinoflagellate Amphidinium carterae: the water soluble peridinin-chlorophyll protein complex and intrinsic, membrane chlorophyll a-chlorophyll c2-peridinin protein complex. The combined study of the two complexes facilitated interpretation of a rather complicated relaxation observed in the intrinsic complex. While a single carotenoid triplet state was resolved in the peridinin-chlorophyll protein complex, evidence of at least two different carotenoid triplets was obtained for the intrinsic light-harvesting complex. Most probably, each of these carotenoids protects different chlorophylls. In both complexes the quenching of the chlorophyll triplet states by carotenoids occurs with a very high efficiency (~100%), and with transfer times estimated to be in the order of 0.1ns or even faster. The triplet-triplet energy transfer is thus much faster than formation of the chlorophyll triplet states by intersystem crossing. Since the triplet states of chlorophylls are formed during the whole lifetime of their singlet states, the apparent lifetimes of both states are the same, and observed to be equal to the carotenoid triplet state rise time (~5ns).
Journal of Physical Chemistry Letters | 2017
Vytautas Butkus; Jan Alster; Eglė Bašinskaitė; Ramu̅nas Augulis; Patrik Neuhaus; Leonas Valkunas; Harry L. Anderson; Darius Abramavicius; Donatas Zigmantas
The role of quantum coherence in photochemical functions of molecular systems such as photosynthetic complexes is a broadly debated topic. Coexistence and intermixing of electronic and vibrational coherences has been proposed to be responsible for the observed long-lived coherences and high energy transfer efficiency. However, clear experimental evidence of coherences with different origins operating at the same time has been elusive. In this work, multidimensional spectra obtained from a six-porphyrin nanoring system are analyzed in detail with support from theoretical modeling. We uncover a great diversity of separable electronic, vibrational, and mixed coherences and show their cooperation in shaping the spectroscopic response. The results permit direct assignment of electronic and vibronic states and characterization of the excitation dynamics. The clear disentanglement of coherences in molecules with extended π-conjugation opens up new avenues for exploring coherent phenomena and understanding their importance for the function of complex systems.
Photosynthesis Research | 2014
David Paleček; Roman Dědic; Jan Alster; J. Hála
Chlorosomes from green photosynthetic bacteria belong to the most effective light-harvesting antennas found in nature. Quinones incorporated in bacterichlorophyll (BChl) c aggregates inside chlorosomes play an important redox-dependent photo-protection role against oxidative damage of bacterial reaction centers. Artificial BChl c aggregates with and without quinones were prepared. We applied hole-burning spectroscopy and steady-state absorption and emission techniques at 1.9 K and two different redox potentials to investigate the role of quinones and redox potential on BChl c aggregates at low temperatures. We show that quinones quench the excitation energy in a similar manner as at room temperature, yet the quenching process is not as efficient as for chlorosomes. Interestingly, our data suggest that excitation quenching partially proceeds from higher excitonic states competing with ultrafast exciton relaxation. Moreover, we obtained structure-related parameters such as reorganization energies and inhomogeneous broadening of the lowest excited state, providing experimental ground for theoretical studies aiming at designing plausible large-scale model for BChl c aggregates including disorder.
Journal of Physical Chemistry B | 2018
Ivo S. Vinklárek; Till L. V. Bornemann; Heiko Lokstein; Eckhard Hofmann; Jan Alster; Jakub Pšenčík
Chlorophyll (Chl) triplet states generated in photosynthetic light-harvesting complexes (LHCs) can be quenched by carotenoids to prevent the formation of reactive singlet oxygen. Although this quenching occurs with an efficiency close to 100% at physiological temperatures, the Chl triplets are often observed at low temperatures. This might be due to the intrinsic temperature dependence of the Dexter mechanism of excitation energy transfer, which governs triplet quenching, or by temperature-induced conformational changes. Here, we report about the temperature dependence of Chl triplet quenching in two LHCs. We show that both the effects contribute significantly. In LHC II of higher plants, the core Chls are quenched with a high efficiency independent of temperature. A different subpopulation of Chls, which increases with lowering temperature, is not quenched at all. This is probably caused by the conformational changes which detach these Chls from the energy-transfer chain. In a membrane-intrinsic LHC of dinoflagellates, similarly two subpopulations of Chls were observed. In addition, another part of Chl triplets is quenched by carotenoids with a rate which decreases with temperature. This allowed us to study the temperature dependence of Dexter energy transfer. Finally, a part of Chls was quenched by triplet-triplet annihilation, a phenomenon which was not observed for LHCs before.
Review of Scientific Instruments | 2014
Sunny Yoo; Jan Alster; Donatas Zigmantas
Ultrafast optical spectroscopy techniques are often employed to gain information about samples that are liquid at room temperature and frozen at cryogenic temperatures. However, the measurements suffer from the presence of unwanted, non-resonant signals originating in the sample cell walls. Most of these artifacts can be avoided in the measurements performed at room temperature by using liquid jet systems, i.e., by removing the sample cell. However, these systems cannot be used in low temperature measurements, when the sample is frozen. Herein we describe a freestanding sample holder that allows low temperature ultrafast spectroscopy measurements free of artifacts caused by the sample cell.
19th International Conference on Ultrafast Phenomena (2014), paper 11.Fri.A.4 | 2014
Artem A. Bakulin; Sarah Morgan; Jan Alster; Dassia Egorova; Alex W. Chin; Donatas Zigmantas; Akshay Rao
We use 2D electronic photon-echo spectroscopy to study ultrafast singlet exciton fission in pentacene. Our observations and analysis of vibronic coherences provide insight to the role played by dark multiexcitonic states in mediating fission.
international quantum electronics conference | 2013
David Paleček; Jakub Dostál; Jan Alster; Vytautas Butkus; Donatas Zigmantas
Dynamic quantum effects in biological systems is a hotly debated question, which since recently has been experiencing renewed wave of broad attention [1]. This discussion was initiated by the application of the multidimensional spectroscopy techniques for investigating dynamics in biological complexes. Is nature really optimized to use non-trivial quantum effects, like dynamically evolving coherent superpositions to optimize biological functions, or we observe the beatings of quantum coherences, because we use lasers that are coherent light sources, which are quite different from incoherent sunlight utilized by biological organisms? These are difficult questions that require consideration of the essence of quantum mechanics. An important step towards improved understanding in this area is investigation of the origin of coherent beatings observed in the measurements. Only the beatings with electronic character can in principle indicate the importance of dynamical quantum mechanical effects.
Photosynthesis Research | 2008
Jan Alster; Anita Zupcanova; František Vácha; Jakub Pšenčík
Chemical Physics | 2010
Jan Alster; Tomáš Polívka; Juan B. Arellano; Pavel Chábera; František Vácha; Jakub Pšenčík