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Dive into the research topics where Jonathan T. Copley is active.

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Featured researches published by Jonathan T. Copley.


Innovations in Education and Teaching International | 2007

Audio and video podcasts of lectures for campus‐based students: production and evaluation of student use

Jonathan T. Copley

Podcasting has become a popular medium for accessing and assimilating information and podcasts are increasingly being used to deliver audio recordings of lectures to campus‐based students. This paper describes a simple, cost‐effective and file size‐efficient method for producing video podcasts combining lecture slides and audio without a requirement for any specialist software. The results from a pilot scheme delivering supplementary lecture materials as audio and video podcasts are also presented, including data on download patterns and responses to a survey of students on podcast use. These results reveal students’ enthusiasm for podcast recordings of lecture materials and their primary use by students in revision and preparation for assessments. Survey responses also suggest little likely impact on lecture attendance as a consequence of podcasting, but indicate that podcast recordings of lectures may not be effective in facilitating mobile learning.


PLOS Biology | 2012

The Discovery of New Deep-Sea Hydrothermal Vent Communities in the Southern Ocean and Implications for Biogeography

Alex D. Rogers; Paul A. Tyler; Douglas P. Connelly; Jonathan T. Copley; Rachael H. James; Robert D Larter; Katrin Linse; Rachel A. Mills; Alberto C. Naveira Garabato; Richard D. Pancost; David A. Pearce; Nicholas Polunin; Christopher R. German; Timothy M. Shank; Philipp H. Boersch-Supan; Belinda J. Alker; Alfred Aquilina; Sarah A. Bennett; Andrew Clarke; Robert J. J. Dinley; Alastair G C Graham; Darryl R. H. Green; Jeffrey A. Hawkes; Laura Hepburn; Ana Hilário; Veerle A.I. Huvenne; Leigh Marsh; Eva Ramírez-Llodra; William D. K. Reid; C. N. Roterman

A survey of Antarctic waters along the East Scotia Ridge in the Southern Ocean reveals a new vent biogeographic province among previously uncharacterized deep-sea hydrothermal vent communities.


Nature Communications | 2012

Hydrothermal vent fields and chemosynthetic biota on the world's deepest seafloor spreading centre.

Douglas P. Connelly; Jonathan T. Copley; Bramley J. Murton; K. Stansfield; Paul A. Tyler; Christopher R. German; Cindy Lee Van Dover; Diva J. Amon; Maaten Furlong; Nancy R. Grindlay; Nicholas W. Hayman; Veit Hühnerbach; Maria Judge; Tim Le Bas; Stephen D. McPhail; Alexandra Meier; Ko-ichi Nakamura; Verity Nye; Miles Pebody; Rolf B. Pedersen; Sophie Plouviez; C. M. Sands; Roger C. Searle; Peter Stevenson; Sarah Taws; Sally Wilcox

The Mid-Cayman spreading centre is an ultraslow-spreading ridge in the Caribbean Sea. Its extreme depth and geographic isolation from other mid-ocean ridges offer insights into the effects of pressure on hydrothermal venting, and the biogeography of vent fauna. Here we report the discovery of two hydrothermal vent fields on the Mid-Cayman spreading centre. The Von Damm Vent Field is located on the upper slopes of an oceanic core complex at a depth of 2,300 m. High-temperature venting in this off-axis setting suggests that the global incidence of vent fields may be underestimated. At a depth of 4,960 m on the Mid-Cayman spreading centre axis, the Beebe Vent Field emits copper-enriched fluids and a buoyant plume that rises 1,100 m, consistent with >400 °C venting from the worlds deepest known hydrothermal system. At both sites, a new morphospecies of alvinocaridid shrimp dominates faunal assemblages, which exhibit similarities to those of Mid-Atlantic vents.


PLOS ONE | 2012

Microdistribution of faunal assemblages at deep-sea hydrothermal vents in the Southern Ocean

Leigh Marsh; Jonathan T. Copley; Veerle A.I. Huvenne; Katrin Linse; William D. K. Reid; Alex D. Rogers; Christopher J. Sweeting; Paul A. Tyler

Chemosynthetic primary production by microbes supports abundant faunal assemblages at deep-sea hydrothermal vents, with zonation of invertebrate species typically occurring along physico-chemical gradients. Recently discovered vent fields on the East Scotia Ridge (ESR) in the Southern Ocean represent a new province of vent biogeography, but the spatial dynamics of their distinct fauna have yet to be elucidated. This study determines patterns of faunal zonation, species associations, and relationships between faunal microdistribution and hydrothermal activity in a vent field at a depth of 2,400 m on the ESR. Remotely operated vehicle (ROV) dives obtained high-definition imagery of three chimney structures with varying levels of hydrothermal activity, and a mosaic image of >250 m2 of seafloor co-registered with temperature measurements. Analysis of faunal microdistribution within the mosaiced seafloor reveals a consistent pattern of faunal zonation with increasing distance from vent sources and peak temperatures. Assemblages closest to vent sources are visibly dominated by a new species of anomuran crab, Kiwa n. sp. (abundance >700 individuals m−2), followed by a peltospiroid gastropod (>1,500 individuals m−2), eolepadid barnacle (>1,500 individuals m−2), and carnivorous actinostolid anemone (>30 individuals m−2). Peripheral fauna are not dominated by a single taxon, but include predatory and scavenger taxa such as stichasterid seastars, pycnogonids and octopus. Variation in faunal microdistribution on chimneys with differing levels of activity suggests a possible successional sequence for vent fauna in this new biogeographic province. An increase in δ34S values of primary consumers with distance from vent sources, and variation in their δ13C values also indicate possible zonation of nutritional modes of the vent fauna. By using ROV videography to obtain a high-resolution representation of a vent environment over a greater extent than previous studies, these results provide a baseline for determining temporal change and investigations of processes structuring faunal assemblages at Southern Ocean vents.


PLOS ONE | 2013

Spatial Variation in the Population Structure and Reproductive Biology of Rimicaris hybisae (Caridea: Alvinocarididae) at Hydrothermal Vents on the Mid-Cayman Spreading Centre

Verity Nye; Jonathan T. Copley; Paul A. Tyler

The dynamics and microdistribution of faunal assemblages at hydrothermal vents often reflect the fine-scale spatial and temporal heterogeneity of the vent environment. This study examined the reproductive development and population structure of the caridean shrimp Rimicaris hybisae at the Beebe and Von Damm Vent Fields (Mid-Cayman Spreading Centre, Caribbean) using spatially discrete samples collected in January 2012. Rimicaris hybisae is gonochoric and exhibits iteroparous reproduction. Oocyte size-frequency distributions (21-823 µm feret diameters) varied significantly among samples. Embryo development was asynchronous among females, which may result in asynchronous larval release for the populations. Specimens of R. hybisae from the Von Damm Vent Field (2294 m) were significantly larger than specimens from the Beebe Vent Field. Brooding females at Von Damm exhibited greater size-specific fecundity, possibly as a consequence of a non-linear relationship between fecundity and body size that was consistent across both vent fields. Samples collected from several locations at the Beebe Vent Field (4944–4972 m) revealed spatial variability in the sex ratios, population structure, size, and development of oocytes and embryos of this mobile species. Samples from the Von Damm Vent Field and sample J2-613-24 from Beebe Woods exhibited the highest frequencies of ovigerous females and significantly female-biased sex ratios. Environmental variables within shrimp aggregations may influence the distribution of ovigerous females, resulting in a spatially heterogeneous pattern of reproductive development in R. hybisae, as found in other vent taxa.


Journal of Animal Ecology | 2015

In hot and cold water: differential life‐history traits are key to success in contrasting thermal deep‐sea environments

Leigh Marsh; Jonathan T. Copley; Paul A. Tyler; Sven Thatje

Summary Few species of reptant decapod crustaceans thrive in the cold‐stenothermal waters of the Southern Ocean. However, abundant populations of a new species of anomuran crab, Kiwa tyleri, occur at hydrothermal vent fields on the East Scotia Ridge. As a result of local thermal conditions at the vents, these crabs are not restricted by the physiological limits that otherwise exclude reptant decapods south of the polar front. We reveal the adult life history of this species by piecing together variation in microdistribution, body size frequency, sex ratio, and ovarian and embryonic development, which indicates a pattern in the distribution of female Kiwaidae in relation to their reproductive development. High‐density ‘Kiwa’ assemblages observed in close proximity to sources of vent fluids are constrained by the thermal limit of elevated temperatures and the availability of resources for chemosynthetic nutrition. Although adult Kiwaidae depend on epibiotic chemosynthetic bacteria for nutrition, females move offsite after extrusion of their eggs to protect brooding embryos from the chemically harsh, thermally fluctuating vent environment. Consequently, brooding females in the periphery of the vent field are in turn restricted by low‐temperature physiological boundaries of the deep‐water Southern Ocean environment. Females have a high reproductive investment in few, large, yolky eggs, facilitating full lecithotrophy, with the release of larvae prolonged, and asynchronous. After embryos are released, larvae are reliant on locating isolated active areas of hydrothermal flow in order to settle and survive as chemosynthetic adults. Where the cold water restricts the ability of all adult stages to migrate over long distances, these low temperatures may facilitate the larvae in the location of vent sites by extending the larval development period through hypometabolism. These differential life‐history adaptations to contrasting thermal environments lead to a disjunct life history among males and females of K. tyleri, which is key to their success in the Southern Ocean vent environment. We highlight the complexity in understanding the importance of life‐history biology, in combination with environmental, ecological and physiological factors contributing to the overall global distribution of vent‐endemic species.


Frontiers in Marine Science | 2015

Burrow forms, growth rates and feeding rates of wood-boring Xylophagaidae bivalves revealed by micro-computed tomography

Diva J. Amon; Daniel Sykes; Farah Ahmed; Jonathan T. Copley; Kirsty M. Kemp; Paul A. Tyler; Craig M. Young; Adrian G. Glover

Wood sinking into the deep sea is often colonized by species of the bivalve subfamily Xylophagaidae; specialist organisms that bore into it and digest cellulose with the aid of symbiotic bacteria. Very little is known about the nature of Xylophagaidae borings, Xylophagaidae abundances and population size structures, their rates of growth and their consumption rates of wood. To investigate this, several sets of experimental wood packages were deployed and retrieved: two sets from two seamount sites on the Southwest Indian Ridge (732-750 m), one from the Mid-Cayman Spreading Centre in the Caribbean (4773 m), and three sets from 500 m in the Tongue of the Ocean, Bahamas. The wood samples were scanned using X-ray micro-computed tomography (micro-CT). The wood at each deployment site was colonized by a different species of xylophagaid. Making novel use of micro-CT images, the morphology of intact xylophagaid borings were shown to resemble Prince Rupert’s Drops with ‘drop lengths’ varying between species. Mean sizes of Xylophagaidae and mean minimum growth rates (2.55 to 8.76 mm yr-1) varied among species also. Rates of wood degradation were up to 60 cm3 per year per 100 individuals but in reality, this may have been an underestimate. This analysis has given insight into the importance of the subfamily Xylophagaidae with regard to wood remineralization in the deep sea.


Organisms Diversity & Evolution | 2015

Low connectivity between 'scaly-foot gastropod' (Mollusca: Peltospiridae) populations at hydrothermal vents on the Southwest Indian Ridge and the Central Indian Ridge

Chong Chen; Jonathan T. Copley; Katrin Linse; Alex D. Rogers

Hydrothermal vents on mid-oceanic ridges are patchily distributed and host many taxa endemic to deep-sea chemosynthetic environments, whose dispersal may be constrained by geographical barriers. The aim of this study was to investigate the connectivity of three populations of the ‘scaly-foot gastropod’ (Chrysomallon squamiferum Chen et al., 2015), a species endemic to hydrothermal vents in the Indian Ocean, amongst two vent fields on the Central Indian Ridge (CIR) and Longqi field, the first sampled vent field on the Southwest Indian Ridge (SWIR). Connectivity and population structure across the two mid-oceanic ridges were investigated using a 489-bp fragment of the cytochrome oxidase c subunit I (COI) gene. Phylogeographical approaches used include measures of genetic differentiation (FST), reconstruction of parsimony haplotype network, mismatch analyses and neutrality tests. Relative migrants per generation were estimated between the fields. Significant differentiation (FST = 0.28–0.29, P < 0.001) was revealed between the vent field in SWIR and the two in CIR. Signatures were detected indicating recent bottleneck events followed by demographic expansion in all populations. Estimates of relative number of migrants were relatively low between the SWIR and CIR, compared with values between the CIR vent fields. The present study is the first to investigate connectivity between hydrothermal vents across two mid-ocean ridges in the Indian Ocean. The phylogeography revealed for C. squamiferum indicates low connectivity between SWIR and CIR vent populations, with implications for the future management of environmental impacts for seafloor mining at hydrothermal vents in the region, as proposed for Longqi.


Zoologica Scripta | 2014

Molecular taxonomy of Osedax (Annelida: Siboglinidae) in the Southern Ocean

Diva J. Amon; Helena Wiklund; Thomas G. Dahlgren; Jonathan T. Copley; Craig R. Smith; Alan J. Jamieson; Adrian G. Glover

We report the discovery of three new species of Osedax in the deep Southern Ocean, expanding the diversity and geographical range of this genus of bone‐eating worms. Osedax rogersi sp. n. and Osedax crouchi sp. n. were found on a whale skeleton at 1444 m in the Kemp Caldera in the East Scotia Sea during the Chemosynthetic Ecosystems of the Southern Ocean (ChEsSo) project. The recently described species, Osedax antarcticus, found on whale bones implanted at a depth of 550–650 m off Smith Island in the Bransfield Strait, was also found inhabiting the whale skeleton in the Kemp Caldera. Osedax crouchi as well as another new species Osedax nordenskjoeldi sp. n. have also been found on the implanted whale bones off Smith Island. These two localities are approximately 1800 km apart demonstrating a wide distribution of species within the genus. We describe the three new species, O. rogersi, O. crouchi and O. nordenskjoeldi and report the second record of O. antarcticus. We also present a new phylogenetic analysis for Osedax, including data examining genetic connectivity between the Scotia Arc and the Bransfield Strait.


Frontiers in Marine Science | 2017

Two New Hot-Vent Peltospirid Snails (Gastropoda: Neomphalina) from Longqi Hydrothermal Field, Southwest Indian Ridge

Chong Chen; Yadong Zhou; Chunsheng Wang; Jonathan T. Copley

The Longqi hydrothermal vent field is the first deep-sea active vent field to be explored on the ultra-slow spreading Southwest Indian Ridge. Although a number of larger taxa has been described or characterised, many smaller and less conspicuous animals remain undescribed. Here, two small (< 7 mm) coiled gastropods belonging to the vent-endemic family Peltospiridae are characterised and formally named from Longqi. Lirapex politus n. sp. is characterised by its entirely smooth shell lacking in axial sculpture, which distinguishes it from the three described congeners from East Pacific Rise and Mid-Atlantic Ridge. Dracogyra subfuscus n. gen., n. sp. is conchologically most similar to Depressigyra globulus from the northeastern Pacific, differing in having an almost closed umbilicus and lacking a basal notch in the outer lip. Radula characteristics clearly distinguish the two, however, with Dracogyra n. gen. having a much wider, shorter, sturdier central tooth and stronger laterals. Molecular phylogeny reconstruction using the cytochrome c oxidase I (COI) barcoding fragment indicate that Dracogyra n. gen. is in fact most closely related to Gigantopelta and Lirapex is sister to Pachydermia. The pairwise distance in COI between Dracogyra n. gen. and other peltospirid genera (14.4%~26.6%, mean 21.3%) are sufficient to justify separate genera. Both new species were found around diffuse flow venting areas in association with giant holobiont peltospirid snails Chrysomallon and Gigantopelta. The addition of these two new species increases the total macrofauna species known from Longqi field to 23.

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Paul A. Tyler

University of Southampton

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Katrin Linse

British Antarctic Survey

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Chong Chen

Japan Agency for Marine-Earth Science and Technology

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Leigh Marsh

University of Southampton

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Diva J. Amon

American Museum of Natural History

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Douglas P. Connelly

National Oceanography Centre

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Veerle A.I. Huvenne

National Oceanography Centre

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