Luke C. Loken

High-Speed Limnology: Using Advanced Sensors to Investigate Spatial Variability in Biogeochemistry and Hydrology

Advanced sensor technology is widely used in aquatic monitoring and research. Most applications focus on temporal variability, whereas spatial variability has been challenging to document. We assess the capability of water chemistry sensors embedded in a high-speed water intake system to document spatial variability. This new sensor platform continuously samples surface water at a range of speeds (0 to >45 km h(-1)) resulting in high-density, mesoscale spatial data. These novel observations reveal previously unknown variability in physical, chemical, and biological factors in streams, rivers, and lakes. By combining multiple sensors into one platform, we were able to detect terrestrial-aquatic hydrologic connections in a small dystrophic lake, to infer the role of main-channel vs backwater nutrient processing in a large river and to detect sharp chemical changes across aquatic ecosystem boundaries in a stream/lake complex. Spatial sensor data were verified in our examples by comparing with standard lab-based measurements of selected variables. Spatial fDOM data showed strong correlation with wet chemistry measurements of DOC, and optical NO3 concentrations were highly correlated with lab-based measurements. High-frequency spatial data similar to our examples could be used to further understand aquatic biogeochemical fluxes, ecological patterns, and ecosystem processes, and will both inform and benefit from fixed-site data.

Basin scale controls on CO2 and CH4 emissions from the Upper Mississippi River

The Upper Mississippi River, engineered for river navigation in the 1930s, includes a series of low-head dams and navigation pools receiving elevated sediment and nutrient loads from the mostly agricultural basin. Using high-resolution, spatially resolved water quality sensor measurements along 1385 river kilometers, we show that primary productivity and organic matter accumulation affect river carbon dioxide and methane emissions to the atmosphere. Phytoplankton drive CO2 to near or below atmospheric equilibrium during the growing season, while anaerobic carbon oxidation supports a large proportion of the CO2 and CH4 production. Reductions of suspended sediment load, absent of dramatic reductions in nutrients, will likely further reduce net CO2 emissions from the river. Large river pools, like Lake Pepin, which removes the majority of upstream sediments, and large agricultural tributaries downstream that deliver significant quantities of sediments and nutrients, are likely to persist as major geographical drivers of greenhouse gas emissions.

Regional‐scale controls on dissolved nitrous oxide in the Upper Mississippi River

The U.S. Corn Belt is one of the most intensive agricultural regions of the world and is drained by the Upper Mississippi River (UMR), which forms one of the largest drainage basins in the U.S. While the effects of agricultural nitrate (NO3−) on water quality in the UMR have been well documented, its impact on the production of nitrous oxide (N2O) has not been reported. Using a novel equilibration technique, we present the largest data set of freshwater dissolved N2O concentrations (0.7 to 6 times saturation) and examine the controls on its variability over a 350 km reach of the UMR. Driven by a supersaturated water column, the UMR was an important atmospheric N2O source (+68 mg N2O N m−2 yr−1) that varies nonlinearly with the NO3− concentration. Our analyses indicated that a projected doubling of the NO3− concentration by 2050 would cause dissolved N2O concentrations and emissions to increase by about 40%.

Nitrogen cycling in a freshwater estuary

Freshwater estuaries may be important control points but have received limited research attention, emblematic of a general under-appreciation of these ecosystems and the services they provide. These ecotone environments exist at the interface of rivers flowing into large lakes, where seiches cause mixing of lotic and lentic waters within flooded river deltas. We assessed the dissolved inorganic nitrogen (DIN) retention and processing controls in the Saint Louis River Estuary (SLRE), which receives inputs from rivers, urban sources, and Lake Superior. Nitrate (NO3–N) was the dominant form of DIN and was consistently highest in the lower estuary due to seiche-delivered Lake Superior water and nitrification of ammonium from urban sources. The estuary transitioned from a net NO3–N source during high flows to a net sink during summer baseflow conditions. NO3–N availability controlled site-specific denitrification rates while sediment organic matter explained the spatial pattern in denitrification potential. As the estuary shifted from a riverine state to one with more lake influence, seiches delivered Lake Superior NO3–N to the lower portion of the estuary, alleviating the final denitrification control and activating the estuary’s ‘denitrification pump’. This amplified removal condition is maintained by critically delivered NO3–N during periods of warm temperatures and long residence times. Often these controls are unsynchronized in streams where NO3–N is typically lowest during summer baseflow. Similar ephemeral biogeochemical processes are likely found within other seiche-prone lakes where organic-rich sediments accumulate at river mouths and are supplied with chemically distinct lake water during low flow periods.

Spatial heterogeneity of within‐stream methane concentrations

Streams, rivers, and other freshwater features may be significant sources of CH4 to the atmosphere. However, high spatial and temporal variabilities hinder our ability to understand the underlying processes of CH4 production and delivery to streams and also challenge the use of scaling approaches across large areas. We studied a stream having high geomorphic variability to assess the underlying scale of CH4 spatial variability and to examine whether the physical structure of a stream can explain the variation in surface CH4. A combination of high-resolution CH4 mapping, a survey of groundwater CH4 concentrations, quantitative analysis of methanogen DNA, and sediment CH4 production potentials illustrates the spatial and geomorphic controls on CH4 emissions to the atmosphere. We observed significant spatial clustering with high CH4 concentrations in organic-rich stream reaches and lake transitions. These sites were also enriched in the methane-producing mcrA gene and had highest CH4 production rates in the laboratory. In contrast, mineral-rich reaches had significantly lower concentrations and had lesser abundances of mcrA. Strong relationships between CH4 and the physical structure of this aquatic system, along with high spatial variability, suggest that future investigations will benefit from viewing streams as landscapes, as opposed to ecosystems simply embedded in larger terrestrial mosaics. In light of such high spatial variability, we recommend that future workers evaluate stream networks first by using similar spatial tools in order to build effective sampling programs.

Spatial patterns of enzymatic activity in large water bodies: Ship-borne measurements of beta-D-glucuronidase activity as a rapid indicator of microbial water quality

This study used automated enzymatic activity measurements conducted from a mobile research vessel to detect the spatial variability of beta‑d‑glucuronidase (GLUC) activity in large freshwater bodies. The ship-borne observations provided the first high-resolution spatial data of GLUC activity in large water bodies as rapid indication of fecal pollution and were used to identify associations with hydrological conditions and land use. The utility of this novel approach for water quality screening was evaluated by surveys of the Columbia River, the Mississippi River and the Yahara Lakes, covering up to a 500 km river course and 50 km2 lake area. The ship-borne measurements of GLUC activity correlated with standard E. coli analyses (R2 = 0.71) and revealed the effects of (1) precipitation events and urban run-off on GLUC activity in surface waters, (2) localized point inlets of potential fecal pollution and (3) increasing GLUC signals along gradients of urbanization. We propose that this ship-borne water quality screening to be integrated into future water inventory programs as an initial or complementary tool (besides established fecal indicator parameters), due to its ability to provide near real-time spatial information on potential fecal contamination of large surface water resources and therefore being helpful to greatly reduce potential human health risks.

Spatial variability of CO2 concentrations and biogeochemistry in the Lower Columbia River

Abstract Carbon dioxide (CO2) emissions from rivers and other inland waters are thought to be a major component of regional and global carbon cycling. In large managed rivers such as the Columbia River, contemporary ecosystem changes such as damming, nutrient enrichment, and increased water residence times may lead to reduced CO2 concentrations (and emissions) due to increased primary production, as has been shown in another large North American river (Upper Mississippi). In this work, spatial patterns of water quality, including dissolved CO2 concentrations, were assessed in the Lower Columbia River (LCR) and major tributaries using underway measurements from a small research vessel during July 2016. We observed near-equilibrium CO2 conditions and overall weak supersaturation of CO2 in the main channel (average 133.8% saturation) and tributaries. We observed only weak correlations between CO2 saturation, chlorophyll a fluorescence, and turbidity, thus not strongly supporting our hypothesis of primary productivity controls. In general, the LCR was clear (low turbidity, mean = 1.48 FNU) and had low chlorophyll fluorescence (mean = 0.177 RFU) during the sampling period. As a whole, the LCR was homogeneous with respect to biogeochemical conditions and showed low spatial variability at >100 km scales. Overall, we find that the LCR is likely a weak summertime source of CO2 to the atmosphere, in line with findings from other altered rivers such as the Upper Mississippi.

Habitat Requirements and Occurrence of Crematogaster pilosa (Hymenoptera: Formicidae) Ants within Intertidal Salt Marshes

Abstract Spartina alterniflora Loisel. (Poales: Poaceae) salt marshes provide unique conditions for organisms to develop specialized morphological and behavioral traits. Crematogaster pilosa Emery (Hymenoptera: Formicidae) ants nest in S. alterniflora stems and display polydomy (i.e., multiple nests per colony), which has not been observed in terrestrial populations of this species. We identified new colonies of C. pilosa in S. alterniflora dominated salt marshes of Sapelo Island, Georgia (USA), and characterized the vegetation structure associated with ant presence. Crematogaster pilosa colonies were found most often 2 to 10 m from tidal creek channels in areas with expansive intermediate-height S. alterniflora. Marsh patches with abundant brown leaf vegetation above the high water level were most likely to have ants present (P = 0.03). These areas have extensive vegetation that remains dry during tidal advances, are protected from tidal surges, and most often occur along depositional banks of tidal creeks. Ant populations do not occur in the upland portion of the S. alterniflora marsh, presumably due to a lack of elevated habitat. Persistence of C. pilosa within S. alterniflora salt marshes is tied to the availability of connected habitat that avoids tidal submersion. The narrow band of intermediate-height S. alterniflora plants along tidal creeks provides both the needed horizontal structure and dry vegetation, allowing a terrestrial ant to colonize this seemingly atypical environment.