M. A. De Waard

The ABC transporter BcatrB affects the sensitivity of Botrytis cinerea to the phytoalexin resveratrol and the fungicide fenpiclonil.

During pathogenesis, fungal pathogens are exposed to a variety of fungitoxic compounds. This may be particularly relevant to Botrytis cinerea, a plant pathogen that has a broad host range and, consequently, is subjected to exposure to many plant defense compounds. In practice, the pathogen is controlled with fungicides belonging to different chemical groups. ATP-binding cassette (ABC) transporters might provide protection against plant defense compounds and fungicides by ATP-driven efflux mechanisms. To test this hypothesis, we cloned BcatrB, an ABC transporter-encoding gene from B. cinerea. This gene encodes a 1,439 amino acid protein with nucleotide binding fold (NBF) and transmembrane (TM) domains in a [NBF-TM6]2 topology. The amino acid sequence has 31 to 67% identity with ABC transporters from various fungi. The expression of BcatrB is up regulated by treatment of B. cinerea germlings with the grapevine phytoalexin resveratrol and the fungicide fenpiclonil. BcatrB replacement mutants are not affected in saprophytic growth on different media but are more sensitive to resveratrol and fenpiclonil than the parental isolate. Furthermore, virulence of deltaBcatrB mutants on grapevine leaves was slightly reduced. These results indicate that BcatrB is a determinant in sensitivity of B. cinerea to plant defense compounds and fungicides.

Multidrug resistance in Aspergillus nidulans involves novel ATP-binding cassette transporters

Two single-copy genes, designated atrA and atrB (ATP-binding cassette transporter A and B), were cloned from the filamentous fungus Aspergillus nidulans and sequenced. Based on the presence of conserved motifs and on hydropathy analysis, the products encoded by atrA and atrB can be regarded as novel members of the ATP-binding cassette (ABC) superfamily of membrane transporters. Both products share the same topology as the ABC transporters PDR5 and SNQ2 from Saccharomyces cerevisiae and CDR1 from Candida albicans, which are involved in multidrug resistance of these yeasts. Significant homology also occurs between the ATP-binding cassettes of AtrA and AtrB, and those of mammalian ABC transporters (P-glycoproteins). The transcription of atrA and, in particular, atrB in mycelium of A. nidulans is strongly enhanced by treatment with several drugs, including antibiotics, azole fungicides and plant defense toxins. The enhanced transcription is detectable within a few minutes after drug treatment and coincides with the beginning of energy-dependent drug efflux activity, reported previously in the fungus for azole fungicides. Transcription of the atr genes has been studied in a wild-type and in a series of isogenic strains carrying the imaA and/or imaB genes, which confer multidrug resistance to various toxic compounds such as the azole fungicide imazalil. atrB is constitutively transcribed at a low level in the wild-type and in strains carrying imaA or imaB. Imazalil treatment enhances transcription of atrB to a similar extent in all strains tested. atrA, unlike atrB, displays a relatively high level of constitutive expression in mutants carrying imaB. Imazalil enhances transcription of atrA more strongly in imaB mutants, suggesting that the imaB locus regulates atrA. Functional analysis demonstrated that cDNA of atrB can complement the drug hypersensitivity associated with PDR5 deficiency in S. cerevisiae.

Efficient Agrobacterium tumefaciens-mediated gene disruption in the phytopathogen Mycosphaerella graminicola

Abstract.Agrobacterium tumefaciens-mediated transformation has been successfully applied to the wheat pathogen Mycosphaerella graminicola. Both protoplasts and intact cells have been transformed to hygromycin B resistance. Furthermore, A. tumefaciens-mediated transformation using homologous DNA originating from the M. graminicola ABC transporter gene MgAtr2 resulted in the efficient generation of disruption mutants. In 44% of the transformants, disruption of MgAtr2 was achieved and transformants resulted from the integration of a single copy of the transforming DNA. These results indicate that A. tumefaciens-mediated transformation is a useful tool to generate targeted gene disruption in the phytopathogen M. graminicola, where gene targeting by conventional methods is hardly possible.

The ABC transporter AtrB from Aspergillus nidulans mediates resistance to all major classes of fungicides and some natural toxic compounds

This paper reports the functional characterization of AtrBp, an ABC transporter from Aspergillus nidulans. AtrBp is a multidrug transporter and has affinity to substrates belonging to all major classes of agricultural fungicides and some natural toxic compounds. The substrate profile of AtrBp was determined by assessing the sensitivity of deletion and overexpression mutants of atrB to several toxicants. All mutants showed normal growth as compared to control isolates. DeltaatrB mutants displayed increased sensitivity to anilinopyrimidine, benzimidazole, phenylpyrrole, phenylpyridylamine, strobirulin and some azole fungicides. Increased sensitivity to the natural toxic compounds camptothecin (alkaloid), the phytoalexin resveratrol (stilbene) and the mutagen 4-nitroquinoline oxide was also found. Overexpression mutants were less sensitive to a wide range of chemicals. In addition to the compounds mentioned above, decreased sensitivity to a broader range of azoles, dicarboximides, quintozene, acriflavine and rhodamine 6G was observed. Decreased sensitivity in overexpression mutants negatively correlated with levels of atrB expression. Interestingly, the overexpression mutants displayed increased sensitivity to dithiocarbamate fungicides, chlorothalonil and the iron-activated antibiotic phleomycin. Accumulation of the azole fungicide [(14)C]fenarimol by the overexpression mutants was lower as compared to the parental isolate, demonstrating that AtrBp acts by preventing intracellular accumulation of the toxicant. Various metabolic inhibitors increased accumulation levels of [(14)C]fenarimol in the overexpression mutants to wild-type levels, indicating that reduced accumulation of the fungicide in these mutants is due to increased energy-dependent efflux as a result of higher pump capacity of AtrBp.

The role of ABC transporters from Aspergillus nidulans in protection against cytotoxic agents and in antibiotic production.

Abstract This paper describes the characterization of atrC and atrD (ABC transporters C and D), two novel ABC transporter-encoding genes from the filamentous fungus Aspergillus nidulans, and provides evidence for the involvement of atrD in multidrug transport and antibiotic production. BLAST analysis of the deduced amino acid sequences of AtrCp and AtrDp reveals high homology to ABC transporter proteins of the P-glycoprotein cluster. AtrDp shows a particularly high degree of identity to the amino acid sequence of AfuMdr1p, a previously characterized ABC transporter from the human pathogen A. fumigatus. Northern analysis demonstrates an increase in transcript levels of atrC and atrD in fungal germlings upon treatment with natural toxic compounds and xenobiotics. The atrC gene has a high constitutive level of expression relative to atrD, which suggests its involvement in a metabolic function. Single knock-out mutants for atrC and atrD were generated by gene replacement using pyrG from A. oryzae as a selectable marker. ΔatrD mutants display a hypersensitive phenotype to compounds such as cycloheximide, the cyclosporin derivative PSC 833, nigericin and valinomycin, indicating that AtrDp is involved in protection against cytotoxic compounds. Energy-dependent efflux of the azole-related fungicide fenarimol is inhibited by substrates of AtrDp (e.g. PSC 833, nigericin and valinomycin), suggesting that AtrDp plays a role in efflux of this fungicide. Most interestingly, ΔatrD mutants display a decrease in penicillin production, measured indirectly as antimicrobial activity against Micrococcus luteus. These results suggest that ABC transporters may be involved in secretion of penicillin from fungal cells.

An energy-dependent efflux mechanism for fenarimol in a wild-type strain and fenarimol-resistant mutants of Aspergillus nidulans

Abstract Uptake of [ 14 C]fenarimol (30 μ M ) by mycelium of wild-type Aspergillus nidulans was characterized by a rapid initial accumulation during the first 10 min of incubation with the fungicide and a subsequent gradual release with time. Uptake appeared to be the result of influx and efflux. Influx of fenarimol could not be inhibited by low temperature, anaerobiosis, starvation of mycelium, or incubation with several respiratory inhibitors and is, therefore, a passive process. Under identical test conditions efflux activity was severely inhibited and should, therefore, be regarded as an energy-dependent mechanism. After prolonged incubation (90 min) an equilibrium between influx and efflux was established, resulting in an energy-dependent permeability barrier, since uptake could instantaneously be enhanced by addition of oligomycin or N,N′ -dicyclohexylcarbodiimide. It also indicates that efflux activity is inducible; this hypothesis is supported by the observation that pretreatment of mycelium with unlabeled fungicide prevented subsequent uptake of [ 14 C]fenarimol. Uptake by fenarimol-resistant mutants J146, M193, and R264 of A. nidulans , all possessing the imaB gene for resistance, was relatively low and almost constant in time. In this case, uptake appeared to be considerably enhanced by low temperature, anaerobiosis, starvation of mycelium, and incubation with respiratory inhibitors. Low uptake by these mutants is ascribed to a higher energy-dependent efflux activity for fenarimol compared with the wild-type strain. Upon inhibition of the barrier activity, net uptake resulted from remaining passive influx, which in that case may be as high as in the wild-type strain. The results suggest that both wild-type and fenarimol-resistant mutants possess an energy-dependent efflux mechanism with different efficiencies to excrete fenarimol and probably other chemicals to which cross-resistance or collateral sensitivity is present.

ABC transporters of the wheat pathogen Mycosphaerella graminicola function as protectants against biotic and xenobiotic toxic compounds

We have studied the role of five ABC transporter genes ( MgAtr to MgAtr5) from the wheat pathogen Mycosphaerella graminicola in multidrug resistance (MDR). Complementation of Saccharomyces cerevisiae mutants with the ABC transporter genes from M. graminicola showed that all the genes tested encode proteins that provide protection against chemically unrelated compounds, indicating that their products function as multidrug transporters with distinct but overlapping substrate specificities. Their substrate range in yeast includes fungicides, plant metabolites, antibiotics, and a mycotoxin derived from Fusarium graminearum (diacetoxyscirpenol). Transformants of M. graminicola in which individual ABC transporter genes were deleted or disrupted did not exhibit clear-cut phenotypes, probably due to the functional redundancy of transporters with overlapping substrate specificity. Independently generated MgAtr5 deletion mutants of M. graminicola showed an increase in sensitivity to the putative wheat defence compound resorcinol and to the grape phytoalexin resveratrol, suggesting a role for this transporter in protecting the fungus against plant defence compounds. Bioassays with antagonistic bacteria indicated that MgAtr2 provides protection against metabolites produced by Pseudomonas fluorescens and Burkholderia cepacia. In summary, our results show that ABC transporters from M. graminicola play a role in protection against toxic compounds of natural and artificial origin.

Mechanism of resistance to fenarimol in Aspergillus nidulans

Abstract Mycelial uptake of [ 14 C]fenarimol (10 μg/ml) by 20 fenarimol-resistant mutants of Aspergillus nidulans was compared with uptake by wild-type strain 003. Uptake of the fungicide during the initial 10 min of incubation was significantly lower in all mutant strains than in the wild-type strain indicating that resistance is related with reduced uptake. Upon prolonged incubation a gradual decrease of accumulated radioactivity in the wild-type strain was observed. A few mutants displayed resistance to unrelated chemicals such as p -fluorophenylalanine or d -serine; this phenomenon appeared not to be due to a decreased uptake of the corresponding natural amino acids. Incorporation of [ 3 H]adenine and [ 14 C]leucine by mycelium of mutant M193 was hardly inhibited after 5 hr of incubation with the fungicide, whereas a distinct effect was found with the wild-type strain. At this time also fungitoxicity to the wild-type strain became apparent. Probably, this effect is indirectly caused by inhibition of ergosterol biosynthesis. Mycelium of mutant M193 incorporated [ 14 C]acetate slightly less effectively than the wild-type strain. After 2 hr of incubation with this radiochemical leakage of [ 14 C]acetate metabolites from mycelium of the mutant strain was observed. This indicates that resistance might be correlated with increased excretion of fungal metabolites, which in turn may be related with reduced fitness of fenarimol-resistant mutants.

Laboratory resistance to fungicides which inhibit ergosterol biosynthesis in Penicillium italicum

AbstractLaboratory isolates ofPenicillium italicum with varying levels of resistance to fenarimol were obtained via mass selection of conidia on fenarimol-amended PDA. All fenarimol-resistant isolates showed cross-resistance to other fungicides which inhibit ergosterol biosynthesis (bitertanol, etaconazole, fenapanil, and imazalil), but not to fenpropimorph. In contrast, all isolates with a relatively high degree of resistance to fenarimol, exhibited increased sensitivity to fenpropimorph (negatively correlated cross-resistance). The varying degrees of resistance to ergosterol biosynthesis inhibitors (EBIs) suggest that different mutations for resistance are involved. Isolates with a high degree of resistance were selected from conidial populations of isolates with a low resistance level. This indicates that in sich strains different mutations for resistance are present simultaneously.Somein vitro growth parameters of resistant isolates slightly differed from those of the wild type. Virulence of most resistant isolates on oranges was visually normal and in competition experiments with mixed inocula of wild-type and resistant isolates, the latter could still be isolated after five successive infection cycles on fungicide-free oranges. Nevertheless, the proportion of resistant conidia in the successive inocula gradually decreased.Decay of oranges inoculated with EBI-resistant isolates could still be controlled by a curative dip treatment with imazalil at dosage rates recommended in practice (500 μg ml−1). However, with the highly resistant isolates, decay control was not complete at half this dosage, indicating only a marginal control at the full dosage rate.On the basis of the results described it is assumed that at a high selection pressure of EBIs in practice, gradual accumulation of different mutations for resistance, together with selection of normal fitness may eventually lead to loss of control ofPenicillium decay. Therefore, desease control strategies with a low selection pressure of EBIs are advisable.SamenvattingLaboratoriumisolaten vanPenicillium italicum met uiteenlopende resistentieniveaus tegen fenarimol werden verkregen door massaselectie van conidiën op fenarimolbevattende PDA. Alle fenarimol-resistente isolaten vertoonden kruisresistentie tegen andere fungiciden die de ergosterolbiosynthese remmen (bitertanol, etaconazool, fenapanil, imazalil), maar niet tegen fenpropimorf. Alle isolaten met een relatief hoge graad van fenarimolresistentie waren zelfs gevoeliger voor dit laatste fungicide (negatief gecorreleerde kruisresistentie). De uiteenlopende graden van resistentie tegen ergosterolbiosynthese remmers (EBIs) suggereren dat verschillende mutaties een rol kunnen spelen. Isolaten met een hoge resistentiegraad werden geselecteerd in conidiënpopulaties van isolaten met een lage resistentiegraad. Dit duidt erop dat in dergelijke stammen verschillende mutaties gelijktijdig aanwezig zijn.Er werden kleine verschillen in parameters voorin vitro groei tussen resistente en gevoelige isolaten geconstateerd. De virulentie van vrijwel alle stammen op sinaasappels was normaal; in competitie-experimenten met mengpopulaties van gevoelige en resistente isolaten konden laatstgenoemde isolaten nog na vijf oppenvolgende infectiecycli op fungicide-vrije sinaasappels worden geïsoleerd. Desalniettemin nam het percentage resistente conidiën in de opeenvolgende inocula geleidelijk af. Penicillium-rot op sinaasappel, geïnoculeerd met EBI-resistente isolaten, kon nog worden bestreden door een curatieve dompelbehandeling met imazalil bij een dosering die in de praktijk wordt aanbevolen (500 μg ml−1). Bij een halvering van deze dosering werd echter op sinaasappels, geïnoculeerd met de hoog-resistente isolaten nog rot waargenomen, hetgeen erop duidt dat de bestrijding bij de volle dosering slechts marginaal is.Op grond van de beschreven resultaten kan worden verondersteld dat in de praktijk onder hoge selectiedruk van EBIs een geleidelijke accumulatie van verschillende mutaties, gepaard gaande met selectie van een normale fitheid, kan plaatsvinden, hetgeen uiteindelijk zou kunnen leiden tot onvoldoende bestrijding vanPenicillium-rot. Bestrijdingsstrategieën met een lage selectiedruk van EBIs zijn daarom wenselijk.

Sensitivity of populations of Botrytis cinerea to triazoles, benomyl and vinclozolin

Sensitivity of field isolates (121) ofBotrytis cinerea from France (1992), Germany (1979–1992), Israel (1990) and the Netherlands (1970–1989) to the triazoles tebuconazole and triadimenol, the benzimidazole benomyl and the dicarboximide vinclozolin were tested in radial growth experiments. Resistance to benomyl (in 21 to 100% of isolates tested) and vinclozolin (in 25 to 71% of isolates tested) was common in most countries. EC50s (concentrations of fungicides inhibiting radial mycelial growth ofB. cinerea on B5-agar by 50%) for tebuconazole and triadimenol ranged between 0.01–1.64 and 0.4–32.6Μg ml−1, respectively, and were log-normally distributed. The variation factor (ratio between EC50s of the least and most sensitive isolate tested) amounts 164 and 82 for tebuconazole and triadimenol, respectively. These values are comparable to those for azole fungicides applied in control of other pathogens. Hence, variation in sensitivity to triazoles can probably not explain limited field performance of triazoles towardsB. cinerea. Isolates from south west Germany (1992) were significantly less sensitive to tebuconazole than isolates collected earlier in Germany, Israel and the Netherlands. Such less sensitive populations may contribute to the limited field performance of DMI fungicides towardsB. cinerea. The sensitivity of isolates from south west Germany to tebuconazole was similar to that of DMI-resistant mutants generated in the laboratory. These mutants displayed stable resistance with Q-values (ratio between EC50 of resistant mutant and wild type isolate) between 5 and 20. Sensitivity of field isolates and laboratory mutants to tebuconazole and triadimenol was correlated.