M. E. Vela

Self-assembled monolayers of alkanethiols on Au(111): surface structures, defects and dynamics

The surface structures, defects and dynamics of self-assembled monolayers (SAMs) on Au(111) are reviewed. In the case of the well-known c(4 x 2) and radical 3 x radical 3 R30 degrees surface structures, the present discussion is centered on the determination of the adsorption sites. A more complex scenario emerges for the striped phases, where a variety of surface structures that depends on surface coverage are described. Recently reported surface structures at non-saturation coverage show the richness of the self-assembly process. The study of surface dynamics sheds light on the relative stability of some of these surface structures. Typical defects at the alkanethiol monolayer are shown and discussed in relation to SAMs applications.

Enhanced Stability of Thiolate Self-Assembled Monolayers (SAMs) on Nanostructured Gold Substrates

Degradation of thiolate self-assembled monolayers (SAMs) in ambient conditions and liquid environments seriously limits the fabrication of thiol-based devices. Here, we demonstrate that nanostructured gold exhibits higher resistance to SAM degradation and increased electrochemical stability against thiolate desorption in relation to polycrystalline preferred oriented Au(111). The increased stability can be related to the presence of a large number of defects, such as adatoms, vacancies, and steps where the thiolate binding energy is stronger than at terraces. The nanostructured Au is an interesting platform because it can be easily prepared, has surface enhanced Raman spectroscopy (SERS) activity, and exhibits a high signal/noise ratio for amperometric detection because of its large real surface area.

Self-assembly of alkanedithiols on Au(111) from solution: effect of chain length and self-assembly conditions.

A comparative study on the adsorption of buthanedithiol (BDT), hexanedithiol (HDT), and nonanedithiol (NDT) on Au(111) from ethanolic and n-hexane solutions and two different preparation procedures is presented. SAM characterization is based on reflection-absorption infrared spectroscopy, electrochemistry, X-ray photoelectron spectroscopy, and time of flight direct recoil spectroscopy. Results indicate that one can obtain a standing-up phase of dithiols and that the amount of the precursor lying-down phase decreases from BDT to NDT, irrespective of the solvent and self-assembly conditions. A good ordering of the hydrocarbon chains in the standing-up configuration is observed for HDT and NDT when the system is prepared in degassed n-hexane with all operations carried out in the dark. Disulfide bridges at the free SH terminal groups are formed for HDT and to a lesser extent for NDT prepared in ethanol in the presence of oxygen, but we found no evidence of ordered multilayer formation in our experiments. No disulfides were observed for BDT that only forms the lying-down phase. Our results demonstrate the key role of the chain length and the procedure (solvent nature and oxygen presence) in controlling the surface structure and chemistry of SAMs dithiols on Au(111).

Self-assembled monolayers of thiolates on metals: a review article on sulfur-metal chemistry and surface structures

A review article on fundamental aspects of thiolate self-assembled monolayers (SAMs) on the (111) and (100) surfaces of the Cu and Ni groups is presented. In particular this work is focused on two important points that remain poorly understood in most of these metals: the chemistry of the S-metal interface, which strongly depends on the nature of the metallic surface, and the role of the interaction forces that not only guide the self-assembly process but also influence the surface structure of SAMs. In addition to recent experimental and theoretical data on these issues we present new density functional calculations including van der Waals forces for an important number of known thiolate surface structures as a function of the hydrocarbon chain length.

Strong Correlation between Molecular Configurations and Charge- Transfer Processes Probed at the Single-Molecule Level by Surface- Enhanced Raman Scattering

Single-molecule (SM) electrochemistry studied by surface-enhanced Raman scattering (SERS) with high spectral resolution reveals a picture in which the frequency of Raman modes is correlated with the electrochemical process through the interaction with the surface. Previously unexplored phenomena can be revealed by the synergy of electrochemistry and SM-SERS, which explores in this case subtler spectroscopic aspects (like the frequency of a vibration within the inhomogeneous broadening of a many-molecules Raman peak) to gain the information. We demonstrate, among other things, that the interaction with the surface is correlated both with the molecule vibrational frequencies and with the ability of single molecules to be reduced/oxidized at different potentials along the electrochemical cycle. Qualitative models of the interaction of molecules with surfaces are also touched upon.

Thiol-capped gold: from planar to irregular surfaces

Thiol-capped metals, in particular gold, have a wide range of technological applications, especially for building systems by bottom-up methods. In most cases, stability of the organic film during exposure to ambient conditions and/or to electrolyte solutions is a crucial requirement. In this work we discuss the stability of butanethiol self-assembled monolayers (SAMs) on planar, nanocurved and irregular Au surfaces against both air exposure and electrodesorption in aqueous media. We have found a slower rate of air oxidation and increased stability against electrodesorption for butanethiol monolayers on highly irregular Au surfaces as compared to those on planar surfaces. The increased stability of SAMs on highly irregular surfaces is promising because desorption and degradation seriously limit their application in nanotechnology.

Human Apolipoprotein A-I-Derived Amyloid: Its Association with Atherosclerosis

Amyloidoses constitute a group of diseases in which soluble proteins aggregate and deposit extracellularly in tissues. Nonhereditary apolipoprotein A-I (apoA-I) amyloid is characterized by deposits of nonvariant protein in atherosclerotic arteries. Despite being common, little is known about the pathogenesis and significance of apoA-I deposition. In this work we investigated by fluorescence and biochemical approaches the impact of a cellular microenvironment associated with chronic inflammation on the folding and pro-amyloidogenic processing of apoA-I. Results showed that mildly acidic pH promotes misfolding, aggregation, and increased binding of apoA-I to extracellular matrix elements, thus favoring protein deposition as amyloid like-complexes. In addition, activated neutrophils and oxidative/proteolytic cleavage of the protein give rise to pro amyloidogenic products. We conclude that, even though apoA-I is not inherently amyloidogenic, it may produce non hereditary amyloidosis as a consequence of the pro-inflammatory microenvironment associated to atherogenesis.

Following transformation in self-assembled alkanethiol monolayers on Au(111) by in situ scanning tunneling microscopy

Transformations taking place in alkanethiol adlayers on Au(111) in contact with an electrolyte solution in the potential range −1.1 V<E<−0.4 V have been investigated by in situ scanning tunneling microscopy (STM). Two different types of processes have been identified: potential-dependent transformations involving electrodesorption/electroadsorption of molecules, and structure and defect fluctuations that take place without the influence of the electric potential. Potential-dependent transformations involve two steps: electrodesorption of chemisorbed alkanethiol molecules from Au(111) terraces producing unstable physisorbed aggregates of alkanethiolates, and electrodesorption of alkanethiol molecules that remained chemisorbed at step edges due to the increased coordination number at these substrate sites.

The dynamic behavior of butanethiol and dodecanethiol adsorbates on Au(111) terraces

The dynamics of butanethiol and dodecanethiol monolayers adsorbed on Au(111) studied by ex situ and in situ sequential scanning tunneling microscopy (STM) shows, at room temperature and in the range of seconds, √3×√3 R30°⇔c(4×2) transitions. High-resolution STM imaging also shows that these transitions can be explained by a displacement of adsorbed molecules from hollow to bridge sites and vice versa. Transitions from the p(n×1) superlattice to the √3×√3 R30° lattice were also imaged in real time. These processes appear to be coupled with fluctuations of the hole size of the Au(111) terrace.

Complex Surface Chemistry of 4-Mercaptopyridine Self-Assembled Monolayers on Au(111)

The adsorption of 4-mercaptopyridine on Au(111) from aqueous or ethanolic solutions is studied by different surface characterization techniques and density functional theory calculations (DFT) including van der Waals interactions. X-ray photoelectron spectroscopy and electrochemical data indicate that self-assembly from 4-mercaptopyridine-containing aqueous 0.1 M NaOH solutions for short immersion times (few minutes) results in a 4-mercaptopyridine (PyS) self-assembled monolayer (SAM) with surface coverage 0.2. Scanning tunneling microscopy images show an island-covered Au surface. The increase in the immersion time from minutes to hours results in a complete SAM degradation yielding adsorbed sulfur and a heavily pitted Au surface. Adsorbed sulfur is also the main product when the self-assembly process is made in ethanolic solutions irrespective of the immersion time. We demonstrate for the first time that a surface reaction is involved in PyS SAM decomposition in ethanol, a surface process not favored in water. DFT calculations suggest that the surface reaction takes place via disulfide formation driven by the higher stability of the S-Au(111) system. Other reactions that contribute to sulfidization are also detected and discussed.