Samuel Rezende Paiva

Genome-Wide Analysis of the World's Sheep Breeds Reveals High Levels of Historic Mixture and Strong Recent Selection

Genomic structure in a global collection of domesticated sheep reveals a history of artificial selection for horn loss and traits relating to pigmentation, reproduction, and body size.

A new polymorphism in the Growth and Differentiation Factor 9 (GDF9) gene is associated with increased ovulation rate and prolificacy in homozygous sheep

Brazilian Santa Inês (SI) sheep are very well-adapted to the tropical conditions of Brazil and are an important source of animal protein. A high rate of twin births was reported in some SI flocks. Growth and Differentiation Factor 9 (GDF9) and Bone Morphogenetic Protein 15 (BMP15) are the first two genes expressed by the oocyte to be associated with an increased ovulation rate in sheep. All GDF9 and BMP15 variants characterized, until now, present the same phenotype: the heterozygote ewes have an increased ovulation rate and the mutated homozygotes are sterile. In this study, we have found a new allele of GDF9, named FecG(E) (Embrapa), which leads to a substitution of a phenylalanine with a cysteine in a conservative position of the mature peptide. Homozygote ewes presenting the FecG(E) allele have shown an increase in their ovulation rate (82%) and prolificacy (58%). This new phenotype can be very useful in better understanding the genetic control of follicular development; the mechanisms involved in the control of ovulation rate in mammals; and for the improvement of sheep production.

Microsatellite based genetic diversity and relationships among ten Creole and commercial cattle breeds raised in Brazil

BackgroundBrazil holds the largest commercial cattle populations worldwide. Local cattle breeds can be classified according to their origin, as exotic or Creole. Exotic breeds imported in the last 100 years, both zebuine and taurine, currently make up the bulk of the intensively managed populations. Locally adapted Creole breeds, originated from cattle introduced by the European conquerors derive from natural selection and events of breed admixture. While historical knowledge exists on the Brazilian Creole breeds very little is known on their genetic composition. The objective of this study was to assess the levels of genetic diversity, phylogenetic relationships and patterns of taurine/zebuine admixture among ten cattle breeds raised in Brazil.ResultsSignificant reduction of heterozygosity exists due both to within-population inbreeding and to breed differentiation in both subspecies (taurine and zebuine). For taurine breeds the number of markers that contribute to breed differentiation is larger than for zebuine. A consistently similar number of alleles was seen in both subspecies for all microsatellites. Four Creole breeds were the most genetically diverse followed by the zebuine breeds, the two specialized taurine breeds and the Creole Caracu. Pairwise genetic differentiation were all significant indicating that all breeds can be considered as genetically independent entities. A STRUCTURE based diagram indicated introgression of indicine genes in the local Creole breeds and suggested that occasional Creole introgression can be detected in some Zebuine animals.ConclusionThis study reports on a comprehensive study of the genetic structure and diversity of cattle breeds in Brazil. A significant amount of genetic variation is maintained in the local cattle populations. The genetic data show that Brazilian Creole breeds constitute an important and diverse reservoir of genetic diversity for bovine breeding and conservation. The genetic data was able to shed light on a number of issues related to the local breeds origin and structure. The Brazilian Creole breeds are all important and viable targets for conservation for they display peculiar traits both phenotypic and of cultural and historical nature that deserve conservation efforts.

Genetics and breeding of sheep in Brazil

Studies in genetics and breeding of sheep in Brazil have increased significantly in recent years. These involve research in characterization, breeding and crossing sheep using new technologies available incorporating both classical quantitative and molecular genetics. Improvements in statistical techniques, computational resources as well as analysis of DNA and gaps in present knowledge and opportunities for possible research are pointed out. There is a need for greater interaction between various groups working in the country as well as interactions with other disciplines such as Geographical Information Systems, Statistics, Bioinformatics, as well as biological studies such as physiology and proteomics. Genetica e melhoramento de ovinos no Brasil RESUMO - Estudos em genetica e melhoramento de ovinos no Brasil tem aumentado significativamente nos ultimos anos. Estes envolvem pesquisa em caracterizacao, criacao e cruzamento de ovinos utilizando as novas tecnologias disponiveis, incorporando tanto a genetica quantitativa classica e molecular. Sao abordadas sugestoes para melhorias nas tecnicas de estatistica, nos recursos computacionais, bem como na analise de DNA e nas lacunas no conhecimento atual e possibilidades de possiveis investigacoes. Ha uma necessidade de maior interacao entre varios grupos de trabalho no pais, bem como as interacoes com outras disciplinas, como Sistemas de Informacao Geografica, Estatistica, Bioinformatica, bem como estudos biologicos, como fisiologia e proteomica.

Genetic variability of the Brazilian hair sheep breeds

The objectives of this work were to investigate the genetic structure of the Brazilian hair sheep breeds and to determine the origin of the Santa Ines breed. Molecular similarity was determined using Randomly Amplified Polymorphic DNA - Polymerase Chain Reaction markers in 238 individuals from five naturalized sheep breeds: Santa Ines (48 animals), Rabo Largo (48), Somali (48), Morada Nova (48) and Bergamasca (46), collected in Goias, Sergipe, Bahia, and Ceara States as well as in the Federal District. Fifty-four loci were selected from 19 primers, after a pilot test using 140 primers. Qualitative analyses indicate diagnostic markers for all breeds. All breeds were significantly different from each other. Interbreed differences were explained by 14.92% of the total variation. Santa Ines clustered with Bergamasca (97% bootstrap) and with Rabo Largo, composing the third member of the group (81% bootstrap) while Morada Nova and Somali breeds clustered separately. Each breed should be considered as a separate management and conservation unit, and special care should be taken with Rabo Largo, Morada Nova and Somali breeds, represented by small herds in Brazil.

Skin and coat traits in sheep in Brazil and their relation with heat tolerance.

The objective of this study was to evaluate and compare physical parameters in groups of sheep with different phenotypic characteristics in the Centre-west region of Brazil. Five groups of sheep, with nine animals per group, were selected, three groups of Santa Inês animals with different coat colours (white, brown and black), one group with crossbred animals (Santa Inês × Bergamasca) and one group with animals of the Bergamasca breed. The following traits were evaluated: coat thickness, number and length of hair, pigmentation level in the coat and the skin as well as the percentage area of sweats glands in the skin tissue, carried out by histological analysis. The number of hairs and the area of sweats glands were not significantly different between the evaluated groups. The Bergamasca breed showed low pigmentation of the skin and long hairs. The levels of pigmentation of the hair and of the skin were highly correlated. Between the Santa Inês groups, the group with white hair showed the better parameters for heat adaptation, while the brown hair group showed the lower heat adaptation when compared with another hair breed groups.

Use of heat tolerance traits in discriminating between groups of sheep in central Brazil

The animal and its environment make up an integrated system, where each acts on the other. Tropical regions are characterized by high levels of solar radiation and environmental temperature which may adversely affect animal production. This study carries out a multivariate analysis of physical and physiological traits in sheep in the Federal District of Brazil to test the ability to separate groups of animals and determine which traits are most important in the adaptation of animal to heat stress. The variables studied included coat thickness, number and length of hairs, pigmentation of the skin and coat, number of sweat glands as well as heart and respiratory rates, rectal and skin temperatures, sweating rate, and blood parameters. Five groups of ten animals were used depending on breed (Bergamasca, crossbred, or Santa Inês) or coat color (Santa Inês—brown, white, and black). The data underwent multivariate statistical analyses including cluster, discriminate, and canonical, using Statistical Analysis System—SAS®. The tree diagram showed clear distances between groups studied and canonical analysis was able to separate individuals in groups, especially Bergamasca and white Santa Inês. The canonical correlation redundancy analysis showed that coat reflectance as well as hair length and number of hairs per unit area were the most useful in explaining changes in physiological traits. Skin and coat traits such as hair length, coat reflectance, percentage of epithelial area occupied by sweat glands, skin reflectance and thickness, as well as heart and breathing rates were the most important in separating these groups.

Association between G316A growth hormone polymorphism and economic traits in pigs

The association between G316A growth hormone polymorphism and quantitative traits was investigated in an F2 population of pigs. Association analyses were performed using a statistical model that included genotype, sex, batch and sex by genotype interaction as fixed effects and sire as random effect. The polymorphism was associated with the number of right teats (p = 0.03), heart weight (p = 0.04), lung weight (p = 0.05), carcass length determined by the Brazilian carcass classification method (p = 0.04), picnic shoulder weight (p = 0.07), jowl weight (p = 0.01), pH 24 h after slaughtering (p = 0.03) and drip loss (p = 0.01). Interaction between genotype and sex was observed for six performance traits. The additive effect was significant (p < 0.10) for heart weight, jowl weight and pH 24 h after slaughtering. The effect of dominance was significant (p < 0.05) for number of right teats, heart weight, carcass length, picnic shoulder weight and pH 24 h after slaughtering. This study shows that the growth hormone gene is a potential candidate for investigating the phenotypic variation of quantitative traits in pigs, and suggests its possible application in breeding programs.

Genetic factors of sheep affecting gastrointestinal parasite infections in the Distrito Federal, Brazil

Three sheep farms were used in the Distrito Federal, Central Brazil, to study the occurrence of parasites in the feces. A total of 1798 collections were taken over the period of a year. A total of 1205 were taken in Santa Inês breed (SI) in all three farms, 323 in Bergamasca (Berg), 54 in Ile de France, 49 in IlexSI, 103 in Morada Nova (MN) and 64 in TexelxSI, these last five groups being on a single farm. The animals were drenched soon after weaning and feces collected every 3 weeks to calculate fecal egg count (FEC), at least on two occasions on each animal. In some cases, blood was collected to determine packed cell volume (PCV) at fecal collection. Fixed effects included farm, breed/genetic group within farm, animal age (months), birth type (simple, twin) and sex. (Co)variance components were estimated for Santa Inês sheep using restricted maximum likelihood under an animal model. FECs were affected by month and farm showing that climate and management are important sources of variation for the parasites studied. While age and birth type of the lambs did not affect infection level, their genetic group was important, showing that breeding strategies can help control these parasites. Heritabilities for infection level in the sheep varied between 0.09 for Strongyloides and 0.31 for Moniezia expansa. Genetic selection strategies for sheep aimed at reducing these infections should result in more resistant animals.

Desenvolvimento ponderal e diversidade fenotípica entre cruzamentos de ovinos Dorper com raças locais

The goal of this work was to compare growth rate, by mean of growth and adjusted weight curves, and to analyze the diversity among crosses of Dorper ovines and local breeds, based on morphological and carcass features. Crossed animals were weighed in a 15-day-interval and the effects of sex, year and genetic group were analyzed. The non-linear Logistic model was used to estimate curve parameters and the degree of similarity among genetic groups was evaluated through canonic variables. Sex did not influence significantly on weight. There was a significant effect related to year and genetic group over animals development. The estimates of growth curve based on parameters from the Logistic model indicated that the genetic group Dorper x Santa Ines presented a faster growth rate, as estimated by weight at maturity and maturity rate, followed by the genetic groups Dorper x Morada Nova and Dorper x Rabo Largo. Clustering analysis reinforced the differences among genetic groups, placing the three crosses in two groups, one comprising Dorper x Morada Nova and Dorper x Rabo Largo, and another including the cross Dorper x Santa Ines.