Sara Mahshid

Convex lens-induced nanoscale templating

Significance Convex lens-induced nanoscale templating (CLINT) represents a conceptual breakthrough in nanofluidic technology for single-molecule manipulation. CLINT solves a key challenge faced by the nanofluidics field by bridging the multiple-length scales required to efficiently bring single-molecule analytes from the pipette tip to the nanofluidic channel. To do this, CLINT loads single-molecule analytes into embedded nanofeatures via dynamic control of applied vertical confinement, which we have demonstrated by loading and extending DNA within nanochannels. CLINT offers unique advantages in single-molecule DNA mapping by facilitating surface passivation, increasing loading efficiency, obviating the need for applied pressure or electric fields, and enhancing compatibility with physiological buffers and long DNA molecules extracted from complex genomes. We demonstrate a new platform, convex lens-induced nanoscale templating (CLINT), for dynamic manipulation and trapping of single DNA molecules. In the CLINT technique, the curved surface of a convex lens is used to deform a flexible coverslip above a substrate containing embedded nanotopography, creating a nanoscale gap that can be adjusted during an experiment to confine molecules within the embedded nanostructures. Critically, CLINT has the capability of transforming a macroscale flow cell into a nanofluidic device without the need for permanent direct bonding, thus simplifying sample loading, providing greater accessibility of the surface for functionalization, and enabling dynamic manipulation of confinement during device operation. Moreover, as DNA molecules present in the gap are driven into the embedded topography from above, CLINT eliminates the need for the high pressures or electric fields required to load DNA into direct-bonded nanofluidic devices. To demonstrate the versatility of CLINT, we confine DNA to nanogroove and nanopit structures, demonstrating DNA nanochannel-based stretching, denaturation mapping, and partitioning/trapping of single molecules in multiple embedded cavities. In particular, using ionic strengths that are in line with typical biological buffers, we have successfully extended DNA in sub–30-nm nanochannels, achieving high stretching (90%) that is in good agreement with Odijk deflection theory, and we have mapped genomic features using denaturation analysis.

Effect of brookite presence on nanocrystalline anatase – rutile phase transformation

TiO2 nanocrystals were prepared by hydrolysis and peptisation of titanium isopropoxide under different pH values. The as-prepared powder of very fine anatase crystallites ranges from 8 nm in acidic solution of pH 3 to 10 nm in basic solution of pH 8. Heat treatment of the powders leads to grain growth and anatase-rutile transformation. Experimental results have shown that the anatase to rutile phase transformation in the heat-treated powders depend not only on primary crystallite size but also the presence of brookite phase. It is observed that in the powders with the same size the presence brookite phase would accelerate the anatase to rutile transformation. Furthermore it has been found that the transition route is different among samples prepared in acidic or basic solutions. It is also proved that in case of acidic solutions, the transition route follows the brookite-anatase-rutile path, but in case of basic solutions, it would be done via anatase-brookite-rutile. Apart from these observed paths, the main route of A-R remains unchanged for both acidic and basic conditions. So it could be justified that brookite phase together with anatase grain size in titania powder plays very important and different roles and accelerates phase transformation.

Self-Organized Titanium Oxide Nanotubes Prepared in Phosphate Electrolytes: Effect of Voltage and Fluorine Concentration

TiO2 a nanotube array was prepared using an anodization process. The process proceeded in a two-electrode cell containing of platinum sheet as the cathode electrode. Two phosphate-base electrolyte solutions containing different amounts of HF and NH4F were prepared. Different concentration of fluorine ions were examined in respected electrolytes. Current transient techniques were used to produce the TiO2 nanotubes at constant voltage of 1825V. It was revealed that anodization at 1822V, in so-called electrolytes would end up to nano-tubular structure. However the tubular structure prepared at 20V and from phosphate electrolyte containing of 0.5 wt% NH4F as well as 0.5 wt% HF, was recognized the best. The results were also confirmed by Scanning Electron Microscopy (SEM) images. Phase characterization of the nanotube oxide layer was carried out using x-ray diffraction (XRD) method.

Transverse dielectrophoretic-based DNA nanoscale confinement

Confinement of single molecules within nanoscale environments is crucial in a range of fields, including biomedicine, genomics, and biophysics. Here, we present a method that can concentrate, confine, and linearly stretch DNA molecules within a single optical field of view using dielectrophoretic (DEP) force. The method can convert an open surface into one confining DNA molecules without a requirement for bonding, hydrodynamic or mechanical components. We use a transverse DEP field between a top coverslip and a bottom substrate, both of which are coated with a transparent conductive material. Both layers are attached using double-sided tape, defining the chamber. The nanofeatures lie at the “floor” and do not require any bonding. With the application of an alternating (AC) electric field (2 Vp-p) between the top and bottom electrodes, a DEP field gradient is established and used to concentrate, confine and linearly extend DNA in nanogrooves as small as 100-nm in width. We also demonstrate reversible loading/unloading of DNA molecules into nanogrooves and nanopits by switching frequency (between 10 kHz to 100 kHz). The technology presented in this paper provides a new method for single-molecule trapping and analysis.

A Hierarchical 3D Nanostructured Microfluidic Device for Sensitive Detection of Pathogenic Bacteria

Efficient capture and rapid detection of pathogenic bacteria from body fluids lead to early diagnostics of bacterial infections and significantly enhance the survival rate. We propose a universal nano/microfluidic device integrated with a 3D nanostructured detection platform for sensitive and quantifiable detection of pathogenic bacteria. Surface characterization of the nanostructured detection platform confirms a uniform distribution of hierarchical 3D nano-/microisland (NMI) structures with spatial orientation and nanorough protrusions. The hierarchical 3D NMI is the unique characteristic of the integrated device, which enables enhanced capture and quantifiable detection of bacteria via both a probe-free and immunoaffinity detection method. As a proof of principle, we demonstrate probe-free capture of pathogenic Escherichia coli (E. coli) and immunocapture of methicillin-resistant-Staphylococcus aureus (MRSA). Our device demonstrates a linear range between 50 and 104 CFU mL-1 , with average efficiency of 93% and 85% for probe-free detection of E. coli and immunoaffinity detection of MRSA, respectively. It is successfully demonstrated that the spatial orientation of 3D NMIs contributes in quantifiable detection of fluorescently labeled bacteria, while the nanorough protrusions contribute in probe-free capture of bacteria. The ease of fabrication, integration, and implementation can inspire future point-of-care devices based on nanomaterial interfaces for sensitive and high-throughput optical detection.

The Pt/Ni Modified TiO2 Nanotubes and its Catalytic Activity Toward Glucose

The catalytic activity of Pt/Ni/TiO2 nanotubes electrode toward glucose has been studied. Fabrication of Pt/Ni nanostructures was done in a single-bath solution through electrochemical pulse method by changing the deposition potential between -0.3 and -4 V vs. SCE, respectively. The resulting modified electrode represented high conductivity due to the effective presence of metallic components and uniform surface area caused by dispersion of Pt and Ni nanostructures. The scanning electron microscopy images also confirmed that a large amount of metals colonies were well-dispersed at the edge of the TiO2 nanotubes. In addition, the Pt/Ni TiO2 nanotubes modified electrode exhibited an excellent performance in cyclic voltammetry results by changing the concentration of glucose. The proposed electrode had a wide linear range up to 13 mM with the detection sensitivity of 230 μAmM−1 cm−2 respectively. The experiment results also revealed that the electrode exhibited good selectivity with no interference from other oxidable species.