Sébastien Barot

Earthworm services for cropping systems. A review

Intensive agriculture is often criticized for negative impacts on environment and human health. This issue may be solved by a better management of organisms living in crop fields. Here, we review the benefits of earthworms for crops, and we present techniques to increase earthworm abundance. The major points are the following: (1) Earthworms usually improve soil structural stability and soil porosity and reduce runoff. (2) Earthworms modify soil organic matter (SOM) and nutrient cycling. Specifically, earthworms stabilize SOM fractions within their casts, and they also increase the mineralization of organic matter in the short term by altering physical protection within aggregates and enhancing microbial activity. (3) The positive correlation between earthworm abundance and crop production is not systematic, and contrasting effects on yields have been observed. Earthworms induce the production of hormone-like substances that improve plant growth and health. (4) Direct drilling increases earthworm abundance and species diversity, but the beneficial effect of reduced tillage depends upon the species present and tillage intensity. (5) Organic amendments enhance earthworm abundance. (6) Earthworms feeding at soil surface are the most exposed to pesticides and other agrochemicals. Finally, we discuss how to combine management practices, including inoculation, to increase the earthworm services. We conclude that using earthworm services in cropping systems has potential to boost agricultural sustainability.

Increasing soil carbon storage: mechanisms, effects of agricultural practices and proxies. A review

The international 4 per 1000 initiative aims at supporting states and non-governmental stakeholders in their efforts towards a better management of soil carbon (C) stocks. These stocks depend on soil C inputs and outputs. They are the result of fine spatial scale interconnected mechanisms, which stabilise/destabilise organic matter-borne C. Since 2016, the CarboSMS consortium federates French researchers working on these mechanisms and their effects on C stocks in a local and global change setting (land use, agricultural practices, climatic and soil conditions, etc.). This article is a synthesis of this consortium’s first seminar. In the first part, we present recent advances in the understanding of soil C stabilisation mechanisms comprising biotic and abiotic processes, which occur concomitantly and interact. Soil organic C stocks are altered by biotic activities of plants (the main source of C through litter and root systems), microorganisms (fungi and bacteria) and ‘ecosystem engineers’ (earthworms, termites, ants). In the meantime, abiotic processes related to the soil-physical structure, porosity and mineral fraction also modify these stocks. In the second part, we show how agricultural practices affect soil C stocks. By acting on both biotic and abiotic mechanisms, land use and management practices (choice of plant species and density, plant residue exports, amendments, fertilisation, tillage, etc.) drive soil spatiotemporal organic inputs and organic matter sensitivity to mineralisation. Interaction between the different mechanisms and their effects on C stocks are revealed by meta-analyses and long-term field studies. The third part addresses upscaling issues. This is a cause for major concern since soil organic C stabilisation mechanisms are most often studied at fine spatial scales (mm–μm) under controlled conditions, while agricultural practices are implemented at the plot scale. We discuss some proxies and models describing specific mechanisms and their action in different soil and climatic contexts and show how they should be taken into account in large scale models, to improve change predictions in soil C stocks. Finally, this literature review highlights some future research prospects geared towards preserving or even increasing C stocks, our focus being put on the mechanisms, the effects of agricultural practices on them and C stock prediction models.

A quick method to determine root biomass distribution in diameter classes

Describing root biomass distribution in diameter classes is a fundamental way to understand the relation between a plant and its surrounding soil. Current methods used for its measurement are not well adapted to large root systems. A new quick method is proposed for the measurement of diameter distribution in large root systems. It is based on the one used in pedology to assess soil granulometry. Roots are dried, cut in a mixer and placed on a sieve column; biomass distribution according to root diameter is assessed by weighting the biomass recovered in each sieve. The validity of the method was tested by comparing the sieving method results with those obtained on dried root systems with a digital image analysing system. A sensitivity analysis showed that the optimal rotation speed of the mixer was 2,000xa0rpm and the optimal sieving time was 22xa0min. The actual diameter distribution of artificial root mixtures of known root diameter distribution was closely correlated with the root biomass distribution measured by the sieving method (r2xa0=xa00.87). Its application to four identical root systems resulted in values of biomass per diameter class with small standard errors. It is the first method allowing directly to measure biomass (and not length) distribution in diameter classes. It is quick, cheap and does not require root system sub-sampling; consequently, large root systems which were almost never studied can now be analysed. This method is thus adequate for repeated measurements of root diameter distribution in agronomical or ecological research.

Designing mixtures of varieties for multifunctional agriculture with the help of ecology. A review

The study of natural ecosystems and experiments using mixtures of plant species demonstrates that both species and genetic diversity generally promote ecosystem functioning. Therefore, mixing crop varieties is a promising alternative practice to transform modern high-input agriculture that is associated with a drastic reduction of within-field crop genetic diversity and is widely recognized as unsustainable. Here, we review the effects of mixtures of varieties on ecosystem functioning, and their underlying ecological mechanisms, as studied in ecology and agronomy, and outline how this knowledge can help designing more efficient mixtures. We recommend the development of two complementary strategies to optimize variety mixtures by fostering the ecological mechanisms leading to a positive relationship between biodiversity and ecosystem functioning and its stability through time, i.e., sampling and complementarity effects. (1) In the “trait-blind” approach, the design of high-performance mixtures is based on estimations of the mixing abilities of varieties. While this approach is operational because it does not require detailed trait knowledge, it relies on heavy experimental designs to evaluate mixing ability. (2) The trait-based approach is particularly efficient to design mixtures of varieties to provide particular baskets of services but requires building databases of traits for crop varieties and documenting the relations between traits and services. The performance of mixtures requires eventually to be evaluated in real economic, social, and agronomic contexts. We conclude that the need of a multifunctional low-input agriculture strongly increases the attractiveness of mixtures but that new breeding approaches are required to create varieties with higher mixing abilities, to foster complementarity and selection effects through an increase in the variance of relevant traits and to explore new combinations of trait values.

Interactions between the green and brown food web determine ecosystem functioning

Summary n nThe concepts of top-down and bottom-up controls are central to our understanding of cascading trophic effects on ecosystem functioning. Classical food web theory has focused either on food webs based on primary production (green food webs) or on food webs based on detritus (brown food webs) and generally ignored nutrient cycling. n n nWe argue that nutrient cycling connects the two food webs, which questions the traditional concept of top-down and bottom-up controls. n n nBy integrating these two food webs and nutrient cycling into simple models, we investigate the cascading effects from one food web to the other one. Both analytical calculations and simulations show that these two cascading effects depend on simple but distinct mechanisms that are derived from different ecological processes. n n nPredators of decomposers can affect primary production in the green food chain. The signs of these effects are determined by relative proportions of nutrient cycling within the brown food chain. n n nCascading effects within the green food chain can affect decomposer production in a bottom-up way. The carbon/nutrient limitation of decomposers determines the way the green food chain affects decomposer production. n n nThese theoretical findings are applicable to explore real interactions and cascading effects between the green and the brown food webs, such as pelagic–benthic interactions or above-ground–below-ground interactions.

Impact of temperature shifts on the joint evolution of seed dormancy and size

Abstract Seed dormancy and size are two important life‐history traits that interplay as adaptation to varying environmental settings. As evolution of both traits involves correlated selective pressures, it is of interest to comparatively investigate the evolution of the two traits jointly as well as independently. We explore evolutionary trajectories of seed dormancy and size using adaptive dynamics in scenarios of deterministic or stochastic temperature variations. Ecological dynamics usually result in unbalanced population structures, and temperature shifts or fluctuations of high magnitude give rise to more balanced ecological structures. When only seed dormancy evolves, it is counter‐selected and temperature shifts hasten this evolution. Evolution of seed size results in the fixation of a given strategy and evolved seed size decreases when seed dormancy is lowered. When coevolution is allowed, evolutionary variations are reduced while the speed of evolution becomes faster given temperature shifts. Such coevolution scenarios systematically result in reduced seed dormancy and size and similar unbalanced population structures. We discuss how this may be linked to the system stability. Dormancy is counter‐selected because population dynamics lead to stable equilibrium, while small seeds are selected as the outcome of size‐number trade‐offs. Our results suggest that unlike random temperature variation between generations, temperature shifts with high magnitude can considerably alter population structures and accelerate life‐history evolution. This study increases our understanding of plant evolution and persistence in the context of climate changes.

Evolution of nutrient acquisition: when space matters

Summary nEvolution of nutrient acquisition by plants should depend on two forces: local competition is based on the capacity to exploit the local nutrient resource, and regional competition is based on the capacity to occupy the whole landscape through seed production and dispersal. nWe build a spatially explicit simulation model where a limiting nutrient is recycled in each local patch of a lattice by individual plants. The model includes both local and regional competition. nHeterogeneity in nutrient availability and dispersal limitation mitigate the effect of competition for the local nutrient resource and allow the evolution of lower rates of nutrient uptake. Our spatially explicit model suggests that evolution in richer ecosystems selects ‘expensive’ strategies (high acquisition, low conservation of resources) compared to poor ecosystems. nLow rates of nutrient acquisition can be considered as a form of altruism because they leave more resource available for other individuals. Our model thus suggests that the influence of spatial processes on the evolution of altruism is pervasive and is linked to key aspects of ecosystem functioning. nBecause our model includes both regional and local competition, evolution does not minimize the availability of mineral nutrient, although evolution or species replacement is often thought to minimize the availability of nutrient. Taken together, our work confirms that the interplay between local and regional competition is critical for the evolution of plant nutrient strategies and its effect on ecosystem properties.

Elevated CO2 mediates the short-term drought recovery of ecosystem function in low-diversity grassland systems

Background and aimsEcosystems are expected to experience simultaneous environmental changes. This study examines the interactive effects of atmospheric CO2 and plant community composition on grassland ecosystem functioning after a severe drought.MethodsMonocultures of the grass Dactylis glomerata were compared to a four-species grassland community under ambient and elevated CO2, with or without drought. Greenhouse gas fluxes, C and N pools in plants and soil were measured over a 55-day, post-rewetting period for all mesocosms.ResultsExperimental drought reduced aboveground biomass production, but increased soil inorganic N and dissolved organic C (DOC) across CO2 and community composition treatments. Following rewetting, droughted mesocosms had lower ecosystem respiration and higher N2O emissions. After 55xa0days, negative drought effects persisted on above- and belowground C stocks and root N stocks. Elevated CO2 reduced the magnitude of drought effects on ecosystem respiration, N2O fluxes and plant C:N ratios but increased drought-induced changes to soil DOC. The four-species mixture buffered ecosystem respiration from drought effects, but showed higher drought-induced increases in soil inorganic N shortly after rewetting.ConclusionsElevated CO2 mitigates the effects of extreme drought on multiple grassland functions. In contrast, grassland composition appears to have mainly additive effects with drought and elevated CO2 in our simple sown systems.

Author Correction: Impacts of elevated atmospheric CO2 concentration on terrestrial-aquatic carbon transfer and a downstream aquatic microbial community

Under higher atmospheric CO2 concentrations.

Impacts of elevated atmospheric CO 2 concentration on terrestrial-aquatic carbon transfer and a downstream aquatic microbial community

Under higher atmospheric CO2 concentrations, increases in soil moisture and, hence in terrestrial-aquatic carbon transfer are probable. In a coupled terrestrial-aquatic experiment we examined the direct (e.g. through changes in the CO2 water concentration) and indirect (e.g. through changes in the quality and quantity of soil leachates) effects of elevated CO2 on a lake microbial community. The incubation of soils under elevated CO2 resulted in an increase in the volume of leachates and in both chromophoric dissolved organic matter (CDOM) absorption and fluorescence in leachate. When this leachate was added to lake water during a 3-day aquatic incubation, we observed negative direct effects of elevated CO2 on photosynthetic microorganism abundance and a positive, indirect effect on heterotrophic microbial community cell abundances. We also observed a strong, indirect impact on the functional structure of the community with higher metabolic capacities under elevated CO2 along with a significant direct effect on CDOM absorption. All of these changes point to a shift towards heterotrophic processes in the aquatic compartment under higher atmospheric CO2 concentrations.