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Stephan Trong

Joint Genome Institute

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Publication

Featured researches published by Stephan Trong.

BMC Genomics | 2009

Metabolic analysis of the soil microbe Dechloromonas aromatica str. RCB: indications of a surprisingly complex life-style and cryptic anaerobic pathways for aromatic degradation

Kennan Salinero; Keith Keller; William S Feil; Helene Feil; Stephan Trong; Genevieve Di Bartolo; Alla Lapidus

Standards in Genomic Sciences | 2016

Comparing polysaccharide decomposition between the type strains Gramella echinicola KMM 6050T (DSM 19838T) and Gramella portivictoriae UST040801-001T (DSM 23547T), and emended description of Gramella echinicola Nedashkovskaya et al. 2005 emend. Shahina et al. 2014 and Gramella portivictoriae Lau et al. 2005

Irina Panschin; Sixing Huang; Jan P. Meier-Kolthoff; Brian J. Tindall; Manfred Rohde; Susanne Verbarg; Alla Lapidus; James Han; Stephan Trong; Matthew Haynes; T. B. K. Reddy; Marcel Huntemann; Amrita Pati; Natalia Ivanova; Konstantinos Mavromatis; Victor Markowitz; Tanja Woyke; Markus Göker; Hans-Peter Klenk; Nikos C. Kyrpides; Richard L. Hahnke

Standards in Genomic Sciences | 2015

High quality draft genome sequence of Flavobacterium rivuli type strain WB 3.3-2(T) (DSM 21788(T)), a valuable source of polysaccharide decomposing enzymes.

Richard L. Hahnke; Erko Stackebrandt; Jan P. Meier-Kolthoff; Brian J. Tindall; Sixing Huang; Manfred Rohde; Alla Lapidus; James Han; Stephan Trong; Matthew Haynes; T. B. K. Reddy; Marcel Huntemann; Amrita Pati; Natalia Ivanova; Konstantinos Mavromatis; Victor Markowitz; Tanja Woyke; Markus Göker; Nikos C. Kyrpides; Hans-Peter Klenk

Archive | 2009

Gap Resolution: A Software Package for Improving Newbler Genome Assemblies

Stephan Trong; Kurt LaButti; Brian Foster; Cliff Han; Tom Brettin; Alla Lapidus

Standards in Genomic Sciences | 2015

High quality draft genome sequence of Bacteroides barnesiae type strain BL2T (DSM 18169T) from chicken caecum

Mitsuo Sakamoto; Alla Lapidus; James Han; Stephan Trong; Matthew Haynes; T. B. K. Reddy; Natalia Mikhailova; Marcel Huntemann; Amrita Pati; Natalia Ivanova; Rüdiger Pukall; Victor Markowitz; Tanja Woyke; Hans-Peter Klenk; Nikos C. Kyrpides; Moriya Ohkuma

Archive | 2009

POLISHER: A tool for using ultra short reads in genome sequence improvement

Brian Foster; Kurt LaButti; Stephan Trong; Cliff Han; Tom Brettin; Alla Lapidus

Archive | 2008

POLISHER: a Tool for Using Ultra Short Reads in Microbial Genome Finishing

Kurt LaButti; Brian Foster; Steve Lowry; Stephan Trong; Eugene Goltsman; Alla Lapidus

Archive | 2005

Completed Genome Sequence of Dechloromonas aromatica: Analysis of a Microbe with Diverse Bioremediative Capability in Anaerobic Environments

J.D. Coates; K.V. Kellaris; William S. Feil; Helene Feil; L.A. Achenbach; R. Chakraborty; C. Shang; E. Alm; K. Huang; M. Price; Keith Keller; Stephan Trong; G. Di Bartolo; A. Arkin; Alla Lapidus; Paul M. Richardson; Frank W. Larimer; S.M. O'Connor

Archive | 2016

Comparing polysaccharide decomposition between the type strains Gramella

Irina Panschin; Sixing Huang; Jan P. Meier-Kolthoff; Brian J. Tindall; Rohde M; Susanne Verbarg; Alla Lapidus; James Han; Stephan Trong; Matthew Haynes; T. B. K. Reddy; Marcel Huntemann; Amrita Pati; Natalia Ivanova; Konstantinos Mavromatis; Victor Markowitz; Tanja Woyke; Markus Göker; Hans-Peter Klenk; Nikos Kyrpides; Richard L. Hahnke

Archive | 2011

Soil Microbe Dechloromonas aromatica Str. RCB Metabolic Analysis

Kennan Salinero; Keith Keller; William S. Feil; Helene Feil; Stephan Trong; Genevieve Di Bartolo; Alla Lapidus

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Collaboration

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Alla Lapidus

University of California

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Eugene Goltsman

Joint Genome Institute

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Brian Foster

Joint Genome Institute

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Alex Copeland

Joint Genome Institute

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Kurt LaButti

United States Department of Energy

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Paul M. Richardson

United States Department of Energy

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Cliff Han

Los Alamos National Laboratory

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Tom Brettin

Los Alamos National Laboratory

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Vasanth Singan

United States Department of Energy

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Alla Lapidus

University of California

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