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Dive into the research topics where Tom Bird is active.

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Featured researches published by Tom Bird.


Nature Medicine | 2012

Macrophage-derived Wnt opposes Notch signaling to specify hepatic progenitor cell fate in chronic liver disease

Luke Boulter; Olivier Govaere; Tom Bird; Sorina Radulescu; Antonella Pellicoro; Rachel A. Ridgway; Sang Soo Seo; Bart Spee; Nico van Rooijen; Owen J. Sansom; John P. Iredale; Sally Lowell; Tania Roskams; Stuart J. Forbes

During chronic injury, regeneration of the adult liver becomes impaired. In this context bipotent Hepatic Progenitor Cells (HPCs) become activated and can regenerate both cholangiocytes and hepatocytes. Notch and Wnt signalling during hepatic ontogeny are described, but their roles in HPC mediated liver regeneration are unclear. Here we show in human diseased liver and murine models of the ductular reaction with biliary and hepatocyte regeneration that Notch and Wnt signalling direct HPC specification within the activated myofibroblasts and macrophages HPC niche. During biliary regeneration, Numb is downregulated in HPCs, Jagged1 promotes biliary specification within HPCs. During hepatocyte regeneration, macrophage derived canonical Wnt signalling maintains Numb within HPCs, and Notch signalling is reduced promoting hepatocyte specification. This dominant Wnt state is stimulated through engulfment of hepatocyte debris by niche macrophages and can directly influence the HPCs. Macrophage Wnt3a expression in turn facilitates hepatocyte regeneration – thus exemplifying a novel positive feedback mechanism in adult parenchymal regeneration.During chronic injury a population of bipotent hepatic progenitor cells (HPCs) become activated to regenerate both cholangiocytes and hepatocytes. Here we show in human diseased liver and mouse models of the ductular reaction that Notch and Wnt signaling direct specification of HPCs via their interactions with activated myofibroblasts or macrophages. In particular, we found that during biliary regeneration, expression of Jagged 1 (a Notch ligand) by myofibroblasts promoted Notch signaling in HPCs and thus their biliary specification to cholangiocytes. Alternatively, during hepatocyte regeneration, macrophage engulfment of hepatocyte debris induced Wnt3a expression. This resulted in canonical Wnt signaling in nearby HPCs, thus maintaining expression of Numb (a cell fate determinant) within these cells and the promotion of their specification to hepatocytes. By these two pathways adult parenchymal regeneration during chronic liver injury is promoted.


Nature Cell Biology | 2015

Hepatic progenitor cells of biliary origin with liver repopulation capacity

Wei-Yu Lu; Tom Bird; Luke Boulter; Atsunori Tsuchiya; Alicia M. Cole; Trevor Hay; Rachel Guest; Davina Wojtacha; Tak Yung Man; Alison C. MacKinnon; Rachel A. Ridgway; Timothy Kendall; Michael Williams; Thomas Jamieson; Alex Raven; David C. Hay; John P. Iredale; Alan Richard Clarke; Owen J. Sansom; Stuart J. Forbes

Hepatocytes and cholangiocytes self-renew following liver injury. Following severe injury hepatocytes are increasingly senescent, but whether hepatic progenitor cells (HPCs) then contribute to liver regeneration is unclear. Here, we describe a mouse model where the E3 ubiquitin ligase Mdm2 is inducibly deleted in more than 98% of hepatocytes, causing apoptosis, necrosis and senescence with nearly all hepatocytes expressing p21. This results in florid HPC activation, which is necessary for survival, followed by complete, functional liver reconstitution. HPCs isolated from genetically normal mice, using cell surface markers, were highly expandable and phenotypically stable in vitro. These HPCs were transplanted into adult mouse livers where hepatocyte Mdm2 was repeatedly deleted, creating a non-competitive repopulation assay. Transplanted HPCs contributed significantly to restoration of liver parenchyma, regenerating hepatocytes and biliary epithelia, highlighting their in vivo lineage potency. HPCs are therefore a potential future alternative to hepatocyte or liver transplantation for liver disease.


Cell and Tissue Research | 2008

Activation of stem cells in hepatic diseases

Tom Bird; S. Lorenzini; Stuart J. Forbes

The liver has enormous regenerative capacity. Following acute liver injury, hepatocyte division regenerates the parenchyma but, if this capacity is overwhelmed during massive or chronic liver injury, the intrinsic hepatic progenitor cells (HPCs) termed oval cells are activated. These HPCs are bipotential and can regenerate both biliary epithelia and hepatocytes. Multiple signalling pathways contribute to the complex mechanism controlling the behaviour of the HPCs. These signals are delivered primarily by the surrounding microenvironment. During liver disease, stem cells extrinsic to the liver are activated and bone-marrow-derived cells play a role in the generation of fibrosis during liver injury and its resolution. Here, we review our current understanding of the role of stem cells during liver disease and their mechanisms of activation.


Gut | 2010

Characterisation of a stereotypical cellular and extracellular adult liver progenitor cell niche in rodents and diseased human liver

S. Lorenzini; Tom Bird; Luke Boulter; Christopher Bellamy; Kay Samuel; Rebecca L. Aucott; Elizabeth Clayton; Pietro Andreone; Mauro Bernardi; Mathew Golding; Malcolm R. Alison; John P. Iredale; Stuart J. Forbes

Background Stem/progenitor cell niches in tissues regulate stem/progenitor cell differentiation and proliferation through local signalling. Objective To examine the composition and formation of stem progenitor cell niches. Methods The composition of the hepatic progenitor cell niche in independent models of liver injury and hepatic progenitor cell activation in rodents and humans was studied. To identify the origin of the progenitor and niche cells, sex-mismatched bone marrow transplants in mice, who had received the choline–ethionine-deficient-diet to induce liver injury and progenitor cell activation, were used. The matrix surrounding the progenitor cells was described by immunohistochemical staining and its functional role controlling progenitor cell behaviour was studied in cell culture experiments using different matrix layers. Results The progenitor cell response in liver injury is intimately surrounded by myofibroblasts and macrophages, and to a lesser extent by endothelial cells. Hepatic progenitor cells are not of bone marrow origin; however, bone marrow-derived cells associate intimately with these cells and are macrophages. Laminin always surrounds the progenitor cells. In vitro studies showed that laminin aids maintenance of progenitor and biliary cell phenotype and promotes their gene expression (Dlk1, Aquaporin 1, γGT) while inhibiting hepatocyte differentiation and gene expression (CEPB/α). Conclusions During liver damage in rodents and humans a stereotypical cellular and laminin niche forms around hepatic progenitor cells. Laminin helps maintenance of undifferentiated progenitor cells. The niche links the intrahepatic progenitor cells with bone marrow-derived cells and links tissue damage with progenitor cell-mediated tissue repair.


Annals of Neurology | 2003

Epidemiology and genetics of frontotemporal dementia/Pick's disease.

Tom Bird; David S. Knopman; John VanSwieten; Sonia M. Rosso; Howard Feldman; Hirotaka Tanabe; Neil Graff-Raford; Daniel H. Geschwind; Patrice Verpillat; Mike Hutton

Epidemiology Frontotemporal dementia (FTD) is believed to be much less common than Alzheimer’s disease (AD), but data on prevalence and incidence of FTD are very sparse. The lack of data is in large part the result of the lack of methodology for diagnosing and enumerating cases of FTD. With an incidence rate of AD of approximately 1 case per 100 patients, or a prevalence of 6% or higher among individuals over age 70, traditional methods of case ascertainment yield stable and reliable estimates for AD. Because of challenges it presents in clinical diagnosis, incidence or prevalence of FTD could not be estimated by the traditional methods of case identification. What we currently know about the descriptive epidemiology of FTD comes largely from autopsy series. Because the neuropathological diagnosis of FTD was in flux until very recently, there has been a wide divergence of estimates of the incidence of FTD. One major reason for this variation derived from confusion over the relationships between Pick body–positive dementia (ie, “true” Pick’s disease to North American neuropathologists, or Pick’s type A), dementia with swollen chromatolytic neurons (Pick cell dementia, corticobasal degeneration, or Pick’s type B), and dementia lacking distinctive histology (nonspecific degeneration, or Pick’s type C). Pathologists sometimes included only one or two of these variants in their “Pick’s disease” category. In addition, clinical-pathological series could have selection biases that might exclude individuals with the FTD phenotype. Some series report very few FTD cases. Knopman and colleagues reviewed the experience of a brain bank in Minneapolis–St. Paul, Minnesota. Although FTD was infrequent overall (approximately 6%), it represented 17% of dementia patients who were under age 70 years at death. More recently, a neuropathological review of 382 cases from the State of Florida Brain Bank showed that FTD constituted 5% of the total but 8% of those cases under the age 70 years. Two groups have attempted to determine the clinical prevalence of FTD. These studies used novel methods for case identification. In the study from the United Kingdom, record review in the specialty clinics and hospitals in several communities in Cambridge was used to identify dementia cases. Seventeen FTD patients were detected. The mean age at onset was 52.8 ( 8.7) years. Men predominated (14:3). The prevalence of FTD was estimated at 15 cases per 100,000 persons in the 45to 64-year-old age range. The prevalence of AD was identical, so the proportion of FTD to AD was 1.6/1. The other study of FTD prevalence comes from The Netherlands. A total of 245 cases of FTD was reported, with emphasis on the prevalence in the province of Zuid-Holland, where the main study center was located. All neurologists and physicians in nursing homes received a yearly postal enquiry about suspected FTD cases. FTD was diagnosed in 245 patients according to the Lund–Manchester criteria, and the diagnosis was supported by neuroimaging and neuropsychology. Tau mutation analysis and apolipoprotein E (ApoE) genotyping was performed in a large subgroup of patients, and 40 of 98 patients who died during the follow-up came to autopsy during the course of the study. The prevalence of FTD in the province ZuidHolland was 3.6 cases per 100,000 persons at ages 50 to 59 years, 9.4 per 100,000 at ages 60 to 69, and 3.8 per 100,000 at ages 70 to 79. The average age at onset of the 245 patients (51% female) was 57.6 9.0 years. Dementia in one or more first-degree family members was found in 43% of patients, and mutation analysis of the tau gene showed mutations in 34 patients (19, P301L; 5, L315R; 4, G272V; 4, R406W; 1, K280; 1, S320F), all with a positive family history (14% of the total population, and 32% of patients with a positive family history). Neither the ApoE2 nor the ApoE4 allele was overrepresented compared with previously published results from a control group in The Netherlands. Pathological findings in the 40 autopsied patients consisted of dementia lacking distinc-


Proceedings of the National Academy of Sciences of the United States of America | 2013

Bone marrow injection stimulates hepatic ductular reactions in the absence of injury via macrophage-mediated TWEAK signaling

Tom Bird; Wei-Yu Lu; Luke Boulter; Sabrina Gordon-Keylock; Rachel A. Ridgway; Michael Williams; Jessica Taube; James Thomas; Davina Wojtacha; Adriana Gambardella; Owen J. Sansom; John P. Iredale; Stuart J. Forbes

Tissue progenitor cells are an attractive target for regenerative therapy. In various organs, bone marrow cell (BMC) therapy has shown promising preliminary results, but to date no definite mechanism has been demonstrated to account for the observed benefit in organ regeneration. Tissue injury and regeneration is invariably accompanied by macrophage infiltration, but their influence upon the progenitor cells is incompletely understood, and direct signaling pathways may be obscured by the multiple roles of macrophages during organ injury. We therefore examined a model without injury; a single i.v. injection of unfractionated BMCs in healthy mice. This induced ductular reactions (DRs) in healthy mice. We demonstrate that macrophages within the unfractionated BMCs are responsible for the production of DRs, engrafting in the recipient liver and localizing to the DRs. Engrafted macrophages produce the cytokine TWEAK (TNF-like weak inducer of apoptosis) in situ. We go on to show that recombinant TWEAK activates DRs and that BMC mediated DRs are TWEAK dependent. DRs are accompanied by liver growth, occur in the absence of liver tissue injury and hepatic progenitor cells can be isolated from the livers of mice with DRs. Overall these results reveal a hitherto undescribed mechanism linking macrophage infiltration to DRs in the liver and highlight a rationale for macrophage derived cell therapy in regenerative medicine.


Transplantation | 2001

DONOR CYTOKINE GENOTYPE INFLUENCES THE DEVELOPMENT OF ACUTE REJECTION AFTER RENAL TRANSPLANTATION

Sara E. Marshall; Andrew J. Mclaren; Eoin Mckinney; Tom Bird; Neil A. Haldar; Michael Bunce; Peter J. Morris; Ken I. Welsh

Background. Acute allograft rejection remains an important cause of morbidity after kidney transplantation, and has been shown to be a crucial determinant of long-term graft function. Although rejection is mediated by recipient lymphocytes, both donor and recipient factors contribute to the local environment that influences the nature, severity, and duration of the rejection response. Cytokines are a major determinant of this milieu, and this study sought to explore the impact of donor cytokine and cytokine receptor gene polymorphisms on acute rejection after renal transplantation. Methods. A total of 145 cadaveric renal allograft donors were selected for analysis according to the presence or absence of graft rejection in the first 30 days after transplantation. DNA was genotyped for 20 polymorphisms in 11 cytokine and cytokine receptor genes using the polymerase chain reaction with sequence specific primers. Associations were assessed using contingency table analysis and the &khgr;2 test, using a two-set design. Results. A polymorphism at position −174 of the donor IL-6 gene was associated with the incidence (P =0.0002) and severity (P =0.000007) of recipient acute rejection. This finding was independent of HLA-DR matching. Acute rejection was not influenced by recipient IL-6 genotype, or by donor-recipient matching of IL-6 genotype. Conclusion. This study identifies donor IL-6 genotype as a major genetic risk factor for the development of acute rejection after renal transplantation. This provides evidence that donor-derived cytokines play a major role in determining outcome after transplantation, and will contribute to the development of therapeutic algorithms to predict individuals at particularly high risk of acute rejection.


Nature Communications | 2017

Cellular senescence drives age-dependent hepatic steatosis

Mikolaj Ogrodnik; Satomi Miwa; Tamar Tchkonia; Dina Tiniakos; Caroline L. Wilson; Albert Lahat; Christoper P. Day; Alastair D. Burt; Allyson K. Palmer; Quentin M. Anstee; Sushma-Nagaraja Grellscheid; Jan H. J. Hoeijmakers; Sander Barnhoorn; Derek A. Mann; Tom Bird; Wilbert P. Vermeij; James L. Kirkland; João F. Passos; Thomas von Zglinicki; Diana Jurk

The incidence of non-alcoholic fatty liver disease (NAFLD) increases with age. Cellular senescence refers to a state of irreversible cell-cycle arrest combined with the secretion of proinflammatory cytokines and mitochondrial dysfunction. Senescent cells contribute to age-related tissue degeneration. Here we show that the accumulation of senescent cells promotes hepatic fat accumulation and steatosis. We report a close correlation between hepatic fat accumulation and markers of hepatocyte senescence. The elimination of senescent cells by suicide gene-meditated ablation of p16Ink4a-expressing senescent cells in INK-ATTAC mice or by treatment with a combination of the senolytic drugs dasatinib and quercetin (D+Q) reduces overall hepatic steatosis. Conversely, inducing hepatocyte senescence promotes fat accumulation in vitro and in vivo. Mechanistically, we show that mitochondria in senescent cells lose the ability to metabolize fatty acids efficiently. Our study demonstrates that cellular senescence drives hepatic steatosis and elimination of senescent cells may be a novel therapeutic strategy to reduce steatosis.


The Journal of Infectious Diseases | 2001

CCR5 Promoter Polymorphisms in a Kenyan Perinatal Human Immunodeficiency Virus Type 1 Cohort: Association with Increased 2-Year Maternal Mortality

Grace C. John; Tom Bird; Julie Overbaugh; Ruth Nduati; Dorothy Mbori-Ngacha; Tim Rostron; Tao Dong; Leondios G. Kostrikis; Barbra A. Richardson; Sarah Rowland-Jones

The CCR5 chemokine receptor acts as a coreceptor with CD4 to permit infection by primary macrophage-tropic human immunodeficiency virus type 1 (HIV-1) strains. The CCR5Delta32 mutation, which is associated with resistance to infection in homozygous individuals and delayed disease progression in heterozygous individuals, is rare in Africa, where the HIV-1 epidemic is growing rapidly. Several polymorphisms in the promoter region of CCR5 have been identified, the clinical and functional relevance of which remain poorly defined. We evaluated the effect of 4 CCR5 promoter mutations on systemic and mucosal HIV-1 replication, disease progression, and perinatal transmission in a cohort of 276 HIV-1-seropositive women in Nairobi, Kenya. Mutations at positions 59353, 59402, and 59029 were not associated with effects on mortality, virus load, genital shedding, or transmission in this cohort. However, women with the 59356 C/T genotype had a 3.1-fold increased risk of death during the 2-year follow-up period (95% confidence interval [CI], 1.0-9.5) and a significant increase in vaginal shedding of HIV-1-infected cells (odds ratio, 2.1; 95% CI, 1.0-4.3), compared with women with the 59356 C/C genotype.


American Journal of Medical Genetics | 1999

Unified approach to the analysis of genetic variation in serotonergic pathways.

Sara E. Marshall; Tom Bird; Keith W. Hart; Kenneth I. Welsh

Serotonin is a key neurotransmitter in the central nervous system, and dysregulation of serotonergic pathways has been implicated in the pathogenesis of many complex psychiatric diseases. Polymorphisms of many of the genes involved in serotonin biosynthesis, catabolism, and response have been reported, suggesting that genetic variability may underlie the development of diseases such as schizophrenia, obsessive compulsive disorder, and suicide. A number of single-gene polymorphisms in serotonergic pathways have been examined in these and other diseases, but to date results from this candidate gene approach have been disappointing. Although this may be because the detection of a small effect may require the analysis of large numbers of patients and controls, an alternative explanation is that the clinical importance of a single subtle genetic variant may be overlooked unless other functionally related genes are studied in tandem. To facilitate an integrated analysis, we have developed a PCR-SSP-based assay that permits the simultaneous genotyping of 13 single nucleotide polymorphisms in 9 serotonergic genes under identical conditions. These genes include tryptophan hydroxylase, tryptophan dioxygenase, monoamine oxidase A, and the serotonin receptors 5HT1A, 5HT1D-alpha, 5HT1D-beta, 5HT2A, 5HT2C, and 5HT5A. Using this technology, we have genotyped 100 Caucasoid control individuals and demonstrate that this approach is reliable, quick, cheap, and easy to interpret. We anticipate that this will facilitate the analysis of the genetic basis of susceptibility and phenotypic variability of a number of complex psychiatric diseases. Am. J. Med. Genet. (Neuropsychiatr. Genet.) 88:621-627, 1999.

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Luke Boulter

University of Edinburgh

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Wei-Yu Lu

University of Edinburgh

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David C. Hay

University of Edinburgh

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