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Dive into the research topics where Vicky Choi is active.

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Featured researches published by Vicky Choi.


Quantum Information Processing | 2008

Minor-embedding in adiabatic quantum computation: I. The parameter setting problem

Vicky Choi

We show that the NP-hard quadratic unconstrained binary optimization (QUBO) problem on a graph G can be solved using an adiabatic quantum computer that implements an Ising spin-1/2 Hamiltonian, by reduction through minor-embedding of G in the quantum hardware graph U. There are two components to this reduction: embedding and parameter setting. The embedding problem is to find a minor-embedding Gemb of a graph G in U, which is a subgraph of U such that G can be obtained from Gemb by contracting edges. The parameter setting problem is to determine the corresponding parameters, qubit biases and coupler strengths, of the embedded Ising Hamiltonian. In this paper, we focus on the parameter setting problem. As an example, we demonstrate the embedded Ising Hamiltonian for solving the maximum independent set (MIS) problem via adiabatic quantum computation (AQC) using an Ising spin-1/2 system. We close by discussing several related algorithmic problems that need to be investigated in order to facilitate the design of adiabatic algorithms and AQC architectures.


Quantum Information Processing | 2011

Minor-embedding in adiabatic quantum computation: II. Minor-universal graph design

Vicky Choi

In Choi (Quantum Inf Process, 7:193–209, 2008), we introduced the notion of minor-embedding in adiabatic quantum optimization. A minor-embedding of a graph G in a quantum hardware graph U is a subgraph of U such that G can be obtained from it by contracting edges. In this paper, we describe the intertwined adiabatic quantum architecture design problem, which is to construct a hardware graph U that satisfies all known physical constraints and, at the same time, permits an efficient minor-embedding algorithm. We illustrate an optimal complete-graph-minor hardware graph. Given a family


workshop on algorithms in bioinformatics | 2007

Algorithms for the extraction of synteny blocks from comparative maps

Vicky Choi; Chunfang Zheng; Qian Zhu; David Sankoff


Physical Review A | 2009

First-order quantum phase transition in adiabatic quantum computation

Mohammad H. S. Amin; Vicky Choi

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IEEE/ACM Transactions on Computational Biology and Bioinformatics | 2009

Generalized Gene Adjacencies, Graph Bandwidth, and Clusters in Yeast Evolution

Qian Zhu; Zaky Adam; Vicky Choi; David Sankoff


Proceedings of the National Academy of Sciences of the United States of America | 2011

Different adiabatic quantum optimization algorithms for the NP-complete exact cover and 3SAT problems

Vicky Choi

of graphs, a (host) graph U is called


Algorithmica | 2001

Lopsided trees, I: Analyses

Vicky Choi; Mordecai J. Golin


Journal of Chemical Information and Modeling | 2006

On updating torsion angles of molecular conformations.

Vicky Choi

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Gene | 2002

Barnacle: an assembly algorithm for clone-based sequences of whole genomes

Vicky Choi


international symposium on bioinformatics research and applications | 2008

Generalized gene adjacencies, graph bandwidth and clusters in yeast evolution

Qian Zhu; Zaky Adam; Vicky Choi; David Sankoff

-minor-universal if for each graph G in

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Qian Zhu

University of Ottawa

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Mordecai J. Golin

Hong Kong University of Science and Technology

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