Xavier Hoenner

Enhancing the use of Argos satellite data for home range and long distance migration studies of marine animals.

Accurately quantifying animals’ spatial utilisation is critical for conservation, but has long remained an elusive goal due to technological impediments. The Argos telemetry system has been extensively used to remotely track marine animals, however location estimates are characterised by substantial spatial error. State-space models (SSM) constitute a robust statistical approach to refine Argos tracking data by accounting for observation errors and stochasticity in animal movement. Despite their wide use in ecology, few studies have thoroughly quantified the error associated with SSM predicted locations and no research has assessed their validity for describing animal movement behaviour. We compared home ranges and migratory pathways of seven hawksbill sea turtles (Eretmochelys imbricata) estimated from (a) highly accurate Fastloc GPS data and (b) locations computed using common Argos data analytical approaches. Argos 68th percentile error was <1 km for LC 1, 2, and 3 while markedly less accurate (>4 km) for LC ≤0. Argos error structure was highly longitudinally skewed and was, for all LC, adequately modelled by a Student’s t distribution. Both habitat use and migration routes were best recreated using SSM locations post-processed by re-adding good Argos positions (LC 1, 2 and 3) and filtering terrestrial points (mean distance to migratory tracks ± SD = 2.2±2.4 km; mean home range overlap and error ratio  = 92.2% and 285.6 respectively). This parsimonious and objective statistical procedure however still markedly overestimated true home range sizes, especially for animals exhibiting restricted movements. Post-processing SSM locations nonetheless constitutes the best analytical technique for remotely sensed Argos tracking data and we therefore recommend using this approach to rework historical Argos datasets for better estimation of animal spatial utilisation for research and evidence-based conservation purposes.

Phylogeography, Genetic Diversity, and Management Units of Hawksbill Turtles in the Indo-Pacific

Hawksbill turtle (Eretmochelys imbricata) populations have experienced global decline because of a history of intense commercial exploitation for shell and stuffed taxidermied whole animals, and harvest for eggs and meat. Improved understanding of genetic diversity and phylogeography is needed to aid conservation. In this study, we analyzed the most geographically comprehensive sample of hawksbill turtles from the Indo-Pacific Ocean, sequencing 766 bp of the mitochondrial control region from 13 locations (plus Aldabra, n = 4) spanning over 13500 km. Our analysis of 492 samples revealed 52 haplotypes distributed in 5 divergent clades. Diversification times differed between the Indo-Pacific and Atlantic lineages and appear to be related to the sea-level changes that occurred during the Last Glacial Maximum. We found signals of demographic expansion only for turtles from the Persian Gulf region, which can be tied to a more recent colonization event. Our analyses revealed evidence of transoceanic migration, including connections between feeding grounds from the Atlantic Ocean and Indo-Pacific rookeries. Hawksbill turtles appear to have a complex pattern of phylogeography, showing a weak isolation by distance and evidence of multiple colonization events. Our novel dataset will allow mixed-stock analyses of hawksbill turtle feeding grounds in the Indo-Pacific by providing baseline data needed for conservation efforts in the region. Eight management units are proposed in our study for the Indo-Pacific region that can be incorporated in conservation plans of this critically endangered species.

Optimising the design of large-scale acoustic telemetry curtains

Broad-scale acoustic telemetry networks are being established worldwide. The 10-year anniversary of the Integrated Marine Observing System’s Animal Tracking Facility provided the opportunity to assess the efficiency of one of the first national-scale acoustic telemetry networks. Acoustic networks are comprised of acoustic receiver arrays that detect high-frequency transmitters attached to animals that pass within detection range. Herein we assessed the efficiency of eight curtains to detect passing animals by calculating the standardised mean number of detections and transmitters detected at each station. The aim was to determine how many receivers could be decommissioned from each curtain while maintaining its integrity (i.e. detection of all species passing the array). Pivotal locations were defined as the furthest station at which all species would still be detected and where at least 75% of the detections and transmitters would still be detected. By applying these criteria, we were able to improve the cost-effectiveness of our network significantly, reducing the number of stations from 132 to 85 (64% of the original network), yet still retaining 84% of total detections, 86% of transmitters and 100% of detected species. The present study provides a useful framework for refining acoustic telemetry networks.

Australia’s continental-scale acoustic tracking database and its automated quality control process

Our ability to predict species responses to environmental changes relies on accurate records of animal movement patterns. Continental-scale acoustic telemetry networks are increasingly being established worldwide, producing large volumes of information-rich geospatial data. During the last decade, the Integrated Marine Observing System’s Animal Tracking Facility (IMOS ATF) established a permanent array of acoustic receivers around Australia. Simultaneously, IMOS developed a centralised national database to foster collaborative research across the user community and quantify individual behaviour across a broad range of taxa. Here we present the database and quality control procedures developed to collate 49.6 million valid detections from 1891 receiving stations. This dataset consists of detections for 3,777 tags deployed on 117 marine species, with distances travelled ranging from a few to thousands of kilometres. Connectivity between regions was only made possible by the joint contribution of IMOS infrastructure and researcher-funded receivers. This dataset constitutes a valuable resource facilitating meta-analysis of animal movement, distributions, and habitat use, and is important for relating species distribution shifts with environmental covariates.

High-resolution movements of critically endangered hawksbill turtles help elucidate conservation requirements in northern Australia

Despite being critically endangered, the at-sea behaviour of hawksbill turtles (Eretmochelys imbricata) remains insufficiently understood to support a global conservation strategy. Habitat location and spatial use are poorly documented, which is particularly true for the globally important Australian hawksbill population. We equipped 10 adult female hawksbill turtles nesting on Groote Eylandt, northern Australia, with Fastloc GPS and Argos satellite transmitters. We quantified fine-scale habitat use and area-restricted search behaviour, and located potential feeding and developmental habitats by simulating hatchling turtle dispersal patterns by using a particle-tracking hydrological model. During the breeding season, females mostly remained near their nesting site. Post-breeding, all turtles migrated to foraging sites on the Australian continental shelf, primarily in the Gulf of Carpentaria in coastal seagrass pastures, but also offshore near coral-reef platforms. The distribution of adult foraging grounds was similar to simulated dispersal patterns of hatchling turtles from distant rookeries, thus highlighting the ecological significance of the Gulf of Carpentaria for hawksbill turtles. Although this hawksbill turtle population is likely to be endemic to Australian waters, national and international conservation initiatives are required to mitigate sources of anthropogenic mortality (e.g. illegal tortoise-shell trade, incidental captures in fishing gear, marine debris, seabed mining exploitation).

Continental-scale animal tracking reveals functional movement classes across marine taxa

Acoustic telemetry is a principle tool for observing aquatic animals, but coverage over large spatial scales remains a challenge. To resolve this, Australia has implemented the Integrated Marine Observing System’s Animal Tracking Facility which comprises a continental-scale hydrophone array and coordinated data repository. This national acoustic network connects localized projects, enabling simultaneous monitoring of multiple species over scales ranging from 100 s of meters to 1000 s of kilometers. There is a need to evaluate the utility of this national network in monitoring animal movement ecology, and to identify the spatial scales that the network effectively operates over. Cluster analyses assessed movements and residency of 2181 individuals from 92 species, and identified four functional movement classes apparent only through aggregating data across the entire national network. These functional movement classes described movement metrics of individuals rather than species, and highlighted the plasticity of movement patterns across and within populations and species. Network analyses assessed the utility and redundancy of each component of the national network, revealing multiple spatial scales of connectivity influenced by the geographic positioning of acoustic receivers. We demonstrate the significance of this nationally coordinated network of receivers to better reveal intra-specific differences in movement profiles and discuss implications for effective management.

Information infrastructure for Australia’s Integrated Marine Observing System

Australia’s Integrated Marine Observing System (IMOS, imos.org.au) is research infrastructure to establish an enduring observing program for Australian oceanic waters and shelf seas. The observations cover physical, biological, and chemical variables to address themes of multi-decadal ocean change, climate variability and weather extremes, boundary currents and inter-basin flows, continental shelf processes and ecosystem responses.IMOS observations are collected by national facilities based on various platform types and operated by partner institutions around the country. In this paper we describe the infrastructure and workflows developed to manage and distribute the data to the public. We highlight the existing standards and open-source software we have adopted, and the contributions we have made. To demonstrate the value of this infrastructure we provide some illustrations of use and uptake.All IMOS data are freely and openly available to the public via the Ocean Portal (https://imos.aodn.org.au). All IMOS-developed software is open-source and accessible at https://github.com/aodn.

A database of chlorophyll a in Australian waters

Chlorophyll a is the most commonly used indicator of phytoplankton biomass in the marine environment. It is relatively simple and cost effective to measure when compared to phytoplankton abundance and is thus routinely included in many surveys. Here we collate 173, 333 records of chlorophyll a collected since 1965 from Australian waters gathered from researchers on regular coastal monitoring surveys and ocean voyages into a single repository. This dataset includes the chlorophyll a values as measured from samples analysed using spectrophotometry, fluorometry and high performance liquid chromatography (HPLC). The Australian Chlorophyll a database is freely available through the Australian Ocean Data Network portal (https://portal.aodn.org.au/). These data can be used in isolation as an index of phytoplankton biomass or in combination with other data to provide insight into water quality, ecosystem state, and relationships with other trophic levels such as zooplankton or fish.

Nesting ecology of hawksbill turtles at a rookery of international significance in Australia’s Northern Territory

Abstract Context. Following centuries of intense human exploitation, the global stocks of hawksbill turtle have decreased precipitously and the species is currently considered Critically Endangered by the IUCN. Australia supports the largest breeding aggregations worldwide; however, there are no accurate estimates of population abundance and seasonality for hawksbill turtles at important nesting grounds in eastern Arnhem Land. Aims. This study was designed to fill in this lack of ecological information and assist with the conservation and management of hawksbill turtles. More specifically, our overarching goals were to assess nesting seasonality, habitat preferences and provide the first estimate of annual nesting population size at a Northern Territory rookery. Methods. In 2009 and 2010 we collected beach monitoring, satellite telemetry and sand temperature data over two nesting seasons at a group of three islands located 30 km off Groote Eylandt in the Gulf of Carpentaria, northern Australia. We subsequently analysed these data to unravel hawksbill nesting behaviour and reproductive outputs, and examined the vulnerability of this rookery to climate change. Key results. Hawksbill turtle nesting seasonality consistently started in mid-May, peaked in mid-August and ended in late November. Annual nesting abundance showed a near 3-fold increase between 2009 and 2010, with an average of 220 and 580 hawksbill females nesting on this island group respectively. Sand temperature at 50 cm reached more than 30°C at all monitored sites during most of the peak of the incubation period. Conclusions. This remote and untouched group of islands constitutes a major hawksbill turtle rookery both nationally and globally. While anthropogenic impacts and predation are low year round, climate change threatens to skew hatchling sex ratios, eventually leading to an increase in hatchling mortality. Implications. Additional ground-based surveys are required to refine the accuracy of population estimates presented in this study. Given the paucity of data in the region, we recommend this island group off Groote Eylandt be used as a population-monitoring index site for the eastern Arnhem Land hawksbill turtle breeding aggregation.