Yusuf Cakmak
Bilkent University
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Featured researches published by Yusuf Cakmak.
Angewandte Chemie | 2011
Yusuf Cakmak; Safacan Kolemen; Selin Duman; Yavuz Dede; Yusuf Dolen; Bilal Kilic; Ziya Kostereli; Leyla Tatar Yıldırım; A. Lale Doğan; Dicle Guc; Engin U. Akkaya
Photodynamic therapy (PDT) is a treatment modality for certain malignant (skin, head and neck, gastrointestinal, gynecological cancers), premalignant (actinic keratosis), and nonmalignant (psoriasis) indications. Broader acceptance by the medical community and applicability is hampered, at least in part, by the less than optimal photophysical characteristics of the porphyrin derivatives. This situation sparked a worldwide search for novel sensitizers leading to new compounds, some holding more promise than others. The primary cytotoxic agent involved in the photodynamic action is singlet oxygen (Dg), the efficient generation of which is linked invariably to the intersystem crossing (ISC) efficiency of the excited sensitizer. Most organic dyes have low triplet quantum yields, and in many recent candidates for photodynamic sensitizers, heavy atoms are incorporated into the structure as a strategy to improve spin–orbit coupling leading to facilitated intersystem crossing. While this approach seems fail-safe, incorporation of heavy atoms such as bromine, iodine, selenium, and certain lanthanides very often leads to increased “dark toxicity”. Unlike traditional chemotherapy agents, in principle, photodynamic therapy sensitizers themselves can be nontoxic, either at cellular or organ levels, even at relatively high concentrations. We have been interested in trying to find alternative ways of achieving increased intersystem crossing without the use of heavy atoms to minimize dark toxicity, turning our attention to the excitedstate properties of the sensitizers. Designing efficient photoinduced O2 generators requires that any existing operative fluorescence cycle of the fluorophore, which is through the S0!S1!S0 states, has to be perturbed so as to minimize or shut down the S1!S0 deactivation, and switch to the triplet surface once S1 is accessed. A general design principle for a favorable S1!T1 transition from an electronic structure viewpoint would in principle require the structural and electronic compatibility of the S1 and T1 states to surpass that of the S1–S0 pair. Once multiple electronic states come into play, quantum mechanical calculations providing a detailed understanding of the electronic structure are extremely helpful. Multi-configurational self-consistent field (MCSCF) techniques are the stateof-the-art computational chemistry approaches, when near degeneracies and excited states are considered. These methods may not reach chemical accuracy ( 2–3 kcalmol ) for computing total energies, but they are crucial for a qualitatively correct description of the excited states and are capable of providing a conceptually complete picture of the photophysics taking place. Therefore, we mainly employed a popular variant of MCSCF techniques; the complete active space SCF (CASSCF) method in combination with relatively large basis sets and different active spaces. Details of CASSCF calculations are provided in the Supporting Information. Our calculations on the parent Bodipy (4,4-difluoro-4-bora-3a,4adiaza-s-indacene, Scheme 1) showed that natural orbital occupancies of the S1 state describe an open-shell singlet with essentially double (> 1.9) or zero (< 0.1) electrons for all orbitals except the highest occupied molecular orbital (HOMO) and the lowest unoccupied molecular orbital (LUMO) that are singly occupied (see the Supporting Information, Figure S1). It is no surprise to observe a fluorophore with low triplet quantum yield to have an excited state that possesses only two orbitals with single occupancy. Hence, to achieve our goal of efficient switching to the triplet manifold, we have to access excited states that differ from the ones that arise from simple HOMO!LUMO transitions. Among multiply excited configurations, doubly substituted ones are particularly important in enhancing S1–T1 coupling as shown by the seminal work of Salem and Rowland and the following work by Michl. Thus, the substitutions should invoke a simultaneous two-electron excitation from the Scheme 1. Structure and numbering of the parent Bodipy compound. [*] Y. Cakmak, S. Kolemen, B. Kilic, Prof. Dr. E. U. Akkaya UNAM-Institute of Materials Science and Nanotechnology Bilkent University, Ankara, 06800 (Turkey) E-mail: [email protected]
Organic Letters | 2010
Safacan Kolemen; Yusuf Cakmak; Sule Erten-Ela; Yigit Altay; Johannes C. Brendel; Mukundan Thelakkat; Engin U. Akkaya
Boron-dipyrrin dyes, through rational design, yield promising new materials. With strong electron-donor functionalities and anchoring groups for attachment to nanocrystalline TiO(2), these dyes proved useful as sensitizers in dye-sensitized solar cells. Their applicability in a solid-state electrolyte regime offers additional opportunities for practical applications.
Organic Letters | 2009
Yusuf Cakmak; Engin U. Akkaya
Boradiazaindacene dyes were converted into phenylethynyl-BODIPY oligomers via a cycle of reactions, notably including Sonogashira couplings. As expected, as the number, n, of repeating units increases, peak absorption and emission wavelengths are shifted to the red end of the visible spectrum, albeit with smaller increments as n increases. Decyl groups help to keep the solubility remarkably high, and in addition to being very bright red-emitting fluorophores, their rigid rod-like structures could allow their use as functional building blocks.
Chemical Science | 2013
Sundus Erbas-Cakmak; O. Altan Bozdemir; Yusuf Cakmak; Engin U. Akkaya
Guided by the digital design concepts, we synthesized a two-module molecular demultiplexer (DEMUX) where the output is switched between emission at near IR, and cytotoxic singlet oxygen, with light at 625 nm as the input (I), and acid as the control (c). In the neutral form, the compound fluoresces brightly under excitation at 625 nm, however, acid addition moves the absorption bands of the two modules in opposite directions, resulting in an effective reversal of excitation energy transfer direction, with a concomitant upsurge of singlet oxygen generation and decrease in emission intensity.
Chemistry: A European Journal | 2010
O. Altan Bozdemir; Yusuf Cakmak; Fazli Sozmen; Tugba Ozdemir; Aleksander Siemiarczuk; Engin U. Akkaya
Multichromophoric boron-dipyrromethene (Bodipy) dyes synthesized on phenylene-ethynylene platforms have been be converted to energy transfer cassettes in a one-step chemical transformation. Excitation energy transfer processes in these highly symmetrical derivatives were studied in detail, including time-resolved fluorescence spectroscopy techniques. Excitation spectra and the emission lifetimes suggest efficient energy transfer between the donor and acceptor chromophore. These novel energy transfer cassettes, while highlighting a short-cut approach to similar energy transfer systems, could be useful as large pseudo-Stokes shift multichromophoric dyes with potential applications in diverse applications.
Journal of the American Chemical Society | 2016
Yusuf Cakmak; Sundus Erbas-Cakmak; David A. Leigh
Mechanical point-chirality in a [2]rotaxane is utilized for asymmetric catalysis. Stable enantiomers of the rotaxane result from a bulky group in the middle of the thread preventing a benzylic amide macrocycle shuttling between different sides of a prochiral center, creating point chirality in the vicinity of a secondary amine group. The resulting mechanochirogenesis delivers enantioselective organocatalysis via both enamine (up to 71:29 er) and iminium (up to 68:32 er) activation modes.
Organic Letters | 2014
Safacan Kolemen; Yusuf Cakmak; Ziya Kostereli; Engin U. Akkaya
A dissymmetrically substituted orthogonal BODIPY dimer and an orthogonal BODIPY trimer exist as two stable conformers, which are in fact atropisomeric enantiomers. The racemic mixture can be separated by HPLC using a chiral stationary phase. These enantiomeric derivatives hold great potential as chiral agents in asymmetric synthesis, fluorogenic/chromogenic sensing, and biological applications.
New Journal of Chemistry | 2015
Yusuf Cakmak; Safacan Kolemen; Muhammed Buyuktemiz; Yavuz Dede; Sule Erten-Ela
Three Bodipy dyes with strong absorptivities in the visible and near infrared regions were designed, synthesized and their potential as photosensitizers for liquid electrolyte-based dye sensitized solar cells have been evaluated. For the first time Bodipy derivatives with bis-dimethylfluorenyl amine donor groups which were known for their bulky structures as donor groups have been used together. We altered our mostly used triphenylamine group with these and investigated the dye-sensitized solar cell efficiencies of this new class of Bodipy dyes.
Chemical Science | 2011
Safacan Kolemen; O. Altan Bozdemir; Yusuf Cakmak; Gokhan Barin; Sule Erten-Ela; Magdalena Marszalek; Jun-Ho Yum; Shaik M. Zakeeruddin; Mohammad Khaja Nazeeruddin; Michael Grätzel; Engin U. Akkaya
Organic Letters | 2010
O. Altan Bozdemir; Fazli Sozmen; Onur Buyukcakir; Ruslan Guliyev; Yusuf Cakmak; Engin U. Akkaya