Alexander Riedel

Integrative taxonomy on the fast track - towards more sustainability in biodiversity research

BackgroundA so called “taxonomic impediment” has been recognized as a major obstacle to biodiversity research for the past two decades. Numerous remedies were then proposed. However, neither significant progress in terms of formal species descriptions, nor a minimum standard for descriptions have been achieved so far. Here, we analyze the problems of traditional taxonomy which often produces keys and descriptions of limited practical value. We suggest that phylogenetics and phenetics had a subtle and so far unnoticed effect on taxonomy leading to inflated species descriptions.DiscussionThe term “turbo-taxonomy” was recently coined for an approach combining cox1 sequences, concise morphological descriptions by an expert taxonomist, and high-resolution digital imaging to streamline the formal description of larger numbers of new species. We propose a further development of this approach which, together with open access web-publication and automated pushing of content from journal into a wiki, may create the most efficient and sustainable way to conduct taxonomy in the future. On demand, highly concise descriptions can be gradually updated or modified in the fully versioned wiki-framework we use. This means that the visibility of additional data is not compromised, while the original species description -the first version- remains preserved in the wiki, and of course in the journal version. A DNA sequence database with an identification engine replaces an identification key, helps to avoid synonyms and has the potential to detect grossly incorrect generic placements. We demonstrate the functionality of a species-description pipeline by naming 101 new species of hyperdiverse New Guinea Trigonopterus weevils in the open-access journal ZooKeys.SummaryFast track taxonomy will not only increase speed, but also sustainability of global species inventories. It will be of great practical value to all the other disciplines that depend on a usable taxonomy and will change our perception of global biodiversity. While this approach is certainly not suitable for all taxa alike, it is the tool that will help to tackle many hyperdiverse groups and pave the road for more sustainable comparative studies, e.g. in community ecology, phylogeography and large scale biogeographic studies.

One hundred and one new species of Trigonopterus weevils from New Guinea

Abstract A species discovery and description pipeline to accelerate and improve taxonomy is outlined, relying on concise expert descriptions, combined with DNA sequencing, digital imaging, and automated wiki species page creation from the journal. One hundred and one new species of Trigonopterus Fauvel, 1862 are described to demonstrate the feasibility of this approach: Trigonopterus aeneipennis sp. n., Trigonopterus aeneus sp. n., Trigonopterus agathis sp. n., Trigonopterus agilis sp. n., Trigonopterus amplipennis sp. n., Trigonopterus ancoruncus sp. n., Trigonopterus angulatus sp. n., Trigonopterus angustus sp. n., Trigonopterus apicalis sp. n., Trigonopterus armatus sp. n., Trigonopterus ascendens sp. n., Trigonopterus augur sp. n., Trigonopterus balimensis sp. n., Trigonopterus basalis sp. n., Trigonopterus conformis sp. n., Trigonopterus constrictus sp. n., Trigonopterus costatus sp. n., Trigonopterus costicollis sp. n., Trigonopterus crassicornis sp. n., Trigonopterus cuneipennis sp. n., Trigonopterus cyclopensis sp. n., Trigonopterus dentirostris sp. n., Trigonopterus discoidalis sp. n., Trigonopterus dromedarius sp. n., Trigonopterus durus sp. n., Trigonopterus echinus sp. n., Trigonopterus edaphus sp. n., Trigonopterus eremitus sp. n., Trigonopterus euops sp. n., Trigonopterus ferrugineus sp. n., Trigonopterus fusiformis sp. n., Trigonopterus glaber sp. n., Trigonopterus gonatoceros sp. n., Trigonopterus granum sp. n., Trigonopterus helios sp. n., Trigonopterus hitoloorum sp. n., Trigonopterus imitatus sp. n., Trigonopterus inflatus sp. n., Trigonopterus insularis sp. n., Trigonopterus irregularis sp. n., Trigonopterus ixodiformis sp. n., Trigonopterus kanawiorum sp. n., Trigonopterus katayoi sp. n., Trigonopterus koveorum sp. n., Trigonopterus kurulu sp. n., Trigonopterus lekiorum sp. n., Trigonopterus lineatus sp. n., Trigonopterus lineellus sp. n., Trigonopterus maculatus sp. n., Trigonopterus mimicus sp. n., Trigonopterus monticola sp. n., Trigonopterus montivagus sp. n., Trigonopterus moreaorum sp. n., Trigonopterus myops sp. n., Trigonopterus nangiorum sp. n., Trigonopterus nothofagorum sp. n., Trigonopterus ovatus sp. n., Trigonopterus oviformis sp. n., Trigonopterus parumsquamosus sp. n., Trigonopterus parvulus sp. n., Trigonopterus phoenix sp. n., Trigonopterus plicicollis sp. n., Trigonopterus politoides sp. n., Trigonopterus pseudogranum sp. n., Trigonopterus pseudonasutus sp. n., Trigonopterus ptolycoides sp. n., Trigonopterus punctulatus sp. n., Trigonopterus ragaorum sp. n., Trigonopterus rhinoceros sp. n., Trigonopterus rhomboidalis sp. n., Trigonopterus rubiginosus sp. n., Trigonopterus rubripennis sp. n., Trigonopterus rufibasis sp. n., Trigonopterus scabrosus sp. n., Trigonopterus scissops sp. n., Trigonopterus scharfi sp. n., Trigonopterus signicollis sp. n., Trigonopterus simulans sp. n., Trigonopterus soiorum sp. n., T sordidus sp. n., Trigonopterus squamirostris sp. n., Trigonopterus striatus sp. n., Trigonopterus strigatus sp. n., Trigonopterus strombosceroides sp. n., Trigonopterus subglabratus sp. n., Trigonopterus sulcatus sp. n., Trigonopterus taenzleri sp. n., Trigonopterus talpa sp. n., Trigonopterus taurekaorum sp. n., Trigonopterus tialeorum sp. n., Trigonopterus tibialis sp. n., Trigonopterus tridentatus sp. n., Trigonopterus uniformis sp. n., Trigonopterus variabilis sp. n., Trigonopterus velaris sp. n., Trigonopterus verrucosus sp. n., Trigonopterus violaceus sp. n., Trigonopterus viridescens sp. n., Trigonopterus wamenaensis sp. n., Trigonopterus wariorum sp. n., Trigonopterus zygops sp. n.. All new species are authored by the taxonomist-in-charge, Alexander Riedel.

A biological screw in a beetle's leg.

Joints on the legs of weevils form a functional screw-and-nut system. The coxa-trochanteral joints on the legs of the weevil Trigonopterus oblongus (Pascoe) work as a biological screw-and-nut system. The apical portions of the coxae closely resemble nuts with well-defined inner threads covering 345°. The corresponding trochanters have perfectly compatible external spiral threads of 410°.

Three-dimensional reconstructions come to life - Interactive 3D PDF animations in functional morphology

Digital surface mesh models based on segmented datasets have become an integral part of studies on animal anatomy and functional morphology; usually, they are published as static images, movies or as interactive PDF files. We demonstrate the use of animated 3D models embedded in PDF documents, which combine the advantages of both movie and interactivity, based on the example of preserved Trigonopterus weevils. The method is particularly suitable to simulate joints with largely deterministic movements due to precise form closure. We illustrate the function of an individual screw-and-nut type hip joint and proceed to the complex movements of the entire insect attaining a defence position. This posture is achieved by a specific cascade of movements: Head and legs interlock mutually and with specific features of thorax and the first abdominal ventrite, presumably to increase the mechanical stability of the beetle and to maintain the defence position with minimal muscle activity. The deterministic interaction of accurately fitting body parts follows a defined sequence, which resembles a piece of engineering.

Multiple transgressions of Wallace's Line explain diversity of flightless Trigonopterus weevils on Bali

The fauna of Bali, situated immediately west of Wallaces Line, is supposedly of recent Javanese origin and characterized by low levels of endemicity. In flightless Trigonopterus weevils, however, we find 100% endemism for the eight species here reported for Bali. Phylogeographic analyses show extensive in situ differentiation, including a local radiation of five species. A comprehensive molecular phylogeny and ancestral area reconstruction of Indo-Malayan–Melanesian species reveals a complex colonization pattern, where the three Balinese lineages all arrived from the East, i.e. all of them transgressed Wallaces Line. Although East Java possesses a rich fauna of Trigonopterus, no exchange can be observed with Bali. We assert that the biogeographic picture of Bali has been dominated by the influx of mobile organisms from Java, but different relationships may be discovered when flightless invertebrates are studied. Our results highlight the importance of in-depth analyses of spatial patterns of biodiversity.

Deep cox1 divergence and hyperdiversity of Trigonopterus weevils in a New Guinea mountain range (Coleoptera, Curculionidae).

Riedel, A., Daawia, D. & Balke, M. (2009). Deep cox1 divergence and hyperdiversity of Trigonopterus weevils in a New Guinea mountain range (Coleoptera, Curculionidae).—Zoologica Scripta, 39, 63–74.

Ninety-eight new species of Trigonopterus weevils from Sundaland and the Lesser Sunda Islands

Abstract The genus Trigonopterus Fauvel, 1862 is highly diverse in Melanesia. Only one species, Trigonopterus amphoralis Marshall, 1925 was so far recorded West of Wallace’s Line (Eastern Sumatra). Based on focused field-work the fauna from Sundaland (Sumatra, Java, Bali, Palawan) and the Lesser Sunda Islands (Lombok, Sumbawa, Flores) is here revised. We redescribe Trigonopterus amphoralis Marshall and describe an additional 98 new species: Trigonopterus acuminatus sp. n., Trigonopterus aeneomicans sp. n., Trigonopterus alaspurwensis sp. n., Trigonopterus allopatricus sp. n., Trigonopterus allotopus sp. n., Trigonopterus angulicollis sp. n., Trigonopterus argopurensis sp. n., Trigonopterus arjunensis sp. n., Trigonopterus asper sp. n., Trigonopterus attenboroughi sp. n., Trigonopterus baliensis sp. n., Trigonopterus batukarensis sp. n., Trigonopterus bawangensis sp. n., Trigonopterus binodulus sp. n., Trigonopterus bornensis sp. n., Trigonopterus cahyoi sp. n., Trigonopterus costipennis sp. n., Trigonopterus cuprescens sp. n., Trigonopterus cupreus sp. n., Trigonopterus dacrycarpi sp. n., Trigonopterus delapan sp. n., Trigonopterus dentipes sp. n., Trigonopterus diengensis sp. n., Trigonopterus dimorphus sp. n., Trigonopterus disruptus sp. n., Trigonopterus dua sp. n., Trigonopterus duabelas sp. n., Trigonopterus echinatus sp. n., Trigonopterus empat sp. n., Trigonopterus enam sp. n., Trigonopterus fissitarsis sp. n., Trigonopterus florensis sp. n., Trigonopterus foveatus sp. n., Trigonopterus fulgidus sp. n., Trigonopterus gedensis sp. n., Trigonopterus halimunensis sp. n., Trigonopterus honjensis sp. n., Trigonopterus ijensis sp. n., Trigonopterus javensis sp. n., Trigonopterus kalimantanensis sp. n., Trigonopterus kintamanensis sp. n., Trigonopterus klatakanensis sp. n., Trigonopterus lampungensis sp. n., Trigonopterus latipes sp. n., Trigonopterus lima sp. n., Trigonopterus lombokensis sp. n., Trigonopterus merubetirensis sp. n., Trigonopterus mesehensis sp. n., Trigonopterus micans sp. n., Trigonopterus misellus sp. n., Trigonopterus palawanensis sp. n., Trigonopterus pangandaranensis sp. n., Trigonopterus paraflorensis sp. n., Trigonopterus pararugosus sp. n., Trigonopterus parasumbawensis sp. n., Trigonopterus pauxillus sp. n., Trigonopterus payungensis sp. n., Trigonopterus porcatus sp. n., Trigonopterus pseudoflorensis sp. n., Trigonopterus pseudosumbawensis sp. n., Trigonopterus punctatoseriatus sp. n., Trigonopterus ranakensis sp. n., Trigonopterus relictus sp. n., Trigonopterus rinjaniensis sp. n., Trigonopterus roensis sp. n., Trigonopterus rugosostriatus sp. n., Trigonopterus rugosus sp. n., Trigonopterus rutengensis sp. n., Trigonopterus saltator sp. n., Trigonopterus santubongensis sp. n., Trigonopterus sasak sp. n., Trigonopterus satu sp. n., Trigonopterus schulzi sp. n., Trigonopterus sebelas sp. n., Trigonopterus sembilan sp. n., Trigonopterus sepuluh sp. n., Trigonopterus seriatus sp. n., Trigonopterus serratifemur sp. n., Trigonopterus setifer sp. n., Trigonopterus silvestris sp. n., Trigonopterus singkawangensis sp. n., Trigonopterus singularis sp. n., Trigonopterus sinuatus sp. n., Trigonopterus squalidus sp. n., Trigonopterus sumatrensis sp. n., Trigonopterus sumbawensis sp. n., Trigonopterus sundaicus sp. n., Trigonopterus suturalis sp. n., Trigonopterus syarbis sp. n., Trigonopterus telagensis sp. n., Trigonopterus tepalensis sp. n., Trigonopterus tiga sp. n., Trigonopterus trigonopterus sp. n., Trigonopterus tujuh sp. n., Trigonopterus ujungkulonensis sp. n., Trigonopterus variolosus sp. n., Trigonopterus vulcanicus sp. n., Trigonopterus wallacei sp. n.. All new species are authored by the taxonomist-in-charge, Alexander Riedel. Most species belong to the litter fauna of primary wet evergreen forests. This habitat has become highly fragmented in the study area and many of its remnants harbor endemic species. Conservation measures should be intensified, especially in smaller and less famous sites to minimize the number of species threatened by extinction.

Macroevolution of hyperdiverse flightless beetles reflects the complex geological history of the Sunda Arc

The Sunda Arc forms an almost continuous chain of islands and thus a potential dispersal corridor between mainland Southeast Asia and Melanesia. However, the Sunda Islands have rather different geological histories, which might have had an important impact on actual dispersal routes and community assembly. Here, we reveal the biogeographical history of hyperdiverse and flightless Trigonopterus weevils. Different approaches to ancestral area reconstruction suggest a complex east to west range expansion. Out of New Guinea, Trigonopterus repeatedly reached the Moluccas and Sulawesi transgressing Lydekker′s Line. Sulawesi repeatedly acted as colonization hub for different segments of the Sunda Arc. West Java, East Java and Bali are recognized as distinct biogeographic areas. The timing and diversification of species largely coincides with the geological chronology of island emergence. Colonization was not inhibited by traditional biogeographical boundaries such as Wallace’s Line. Rather, colonization patterns support distance dependent dispersal and island age limiting dispersal.

Large‐scale molecular phylogeny of Cryptorhynchinae (Coleoptera, Curculionidae) from multiple genes suggests American origin and later Australian radiation

The monophyly of the highly diverse weevil subfamily Cryptorhynchinae is tested with a dataset of 203 taxa representing 159 genera of Curculionoidea, 105 of them Cryptorhynchinae s.l. We construct a phylogeny based on an alignment of 5523 bp, consisting of fragments from two mitochondrial genes (two fragments of COI, 16S) and seven nuclear genes (ArgK, CAD, EF1α, enolase, H4, 18S, 28S). Analyses of maximum likelihood and Bayes inference recovered largely congruent results. Groups with different morphology of the rostral furrow (e.g. Aedemonini, Camptorhinini, Cryptorhynchini, Ithyporini) are not closely related to each other. However, most taxa with a mesosternal receptacle are monophyletic and here defined as Cryptorhynchinae s.s., comprising Cryptorhynchini, Gasterocercini, Torneumatini and Psepholacini, but also Arachnopodini and Idopelma Faust. The genus Phyrdenus LeConte is excluded from Cryptorhynchinae and transferred to Conotrachelini of Molytinae. Thus defined, the group still comprises several thousand species with centres of its diversity in South America and Australia. The early lineages we find in America and the Palearctic, while the extremely diverse faunas of Australia and neighbouring islands mainly belong to a more recent, species‐rich radiation. This also includes a clade comprising the majority of litter‐inhabiting species of New Zealand and the genus Miocalles Pascoe. Flightlessness was attained repeatedly and resulted in convergent evolution of a similar habitus in different zoogeographic regions, mainly exhibited by the polyphyletic genus Acalles Schoenherr.

Ultraconserved elements (UCEs) resolve the phylogeny of Australasian smurf-weevils

Weevils (Curculionoidea) comprise one of the most diverse groups of organisms on earth. There is hardly a vascular plant or plant part without its own species of weevil feeding on it and weevil species diversity is greater than the number of fishes, birds, reptiles, amphibians and mammals combined. Here, we employ ultraconserved elements (UCEs) designed for beetles and a novel partitioning strategy of loci to help resolve phylogenetic relationships within the radiation of Australasian smurf-weevils (Eupholini). Despite being emblematic of the New Guinea fauna, no previous phylogenetic studies have been conducted on the Eupholini. In addition to a comprehensive collection of fresh specimens, we supplement our taxon sampling with museum specimens, and this study is the first target enrichment phylogenomic dataset incorporating beetle specimens from museum collections. We use both concatenated and species tree analyses to examine the relationships and taxonomy of this group. For species tree analyses we present a novel partitioning strategy to better model the molecular evolutionary process in UCEs. We found that the current taxonomy is problematic, largely grouping species on the basis of similar color patterns. Finally, our results show that most loci required multiple partitions for nucleotide rate substitution, suggesting that single partitions may not be the optimal partitioning strategy to accommodate rate heterogeneity for UCE loci.