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Dive into the research topics where Kıvılcım Kılıç is active.

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Featured researches published by Kıvılcım Kılıç.


eLife | 2016

Cell type specificity of neurovascular coupling in cerebral cortex

Hana Uhlirova; Kıvılcım Kılıç; Peifang Tian; Martin Thunemann; Michèle Desjardins; Payam A. Saisan; Sava Sakadžić; Torbjørn V. Ness; Celine Mateo; Qun Cheng; Kimberly L. Weldy; Florence Razoux; Matthieu Vandenberghe; Jonathan A. Cremonesi; Christopher G. L. Ferri; Krystal Nizar; Vishnu B. Sridhar; Tyler Steed; Maxim Abashin; Yeshaiahu Fainman; Eliezer Masliah; Srdjan Djurovic; Ole A. Andreassen; Gabriel A. Silva; David A. Boas; David Kleinfeld; Richard B. Buxton; Gaute T. Einevoll; Anders M. Dale; Anna Devor

Identification of the cellular players and molecular messengers that communicate neuronal activity to the vasculature driving cerebral hemodynamics is important for (1) the basic understanding of cerebrovascular regulation and (2) interpretation of functional Magnetic Resonance Imaging (fMRI) signals. Using a combination of optogenetic stimulation and 2-photon imaging in mice, we demonstrate that selective activation of cortical excitation and inhibition elicits distinct vascular responses and identify the vasoconstrictive mechanism as Neuropeptide Y (NPY) acting on Y1 receptors. The latter implies that task-related negative Blood Oxygenation Level Dependent (BOLD) fMRI signals in the cerebral cortex under normal physiological conditions may be mainly driven by the NPY-positive inhibitory neurons. Further, the NPY-Y1 pathway may offer a potential therapeutic target in cerebrovascular disease. DOI: http://dx.doi.org/10.7554/eLife.14315.001


Philosophical Transactions of the Royal Society B | 2016

The roadmap for estimation of cell-type-specific neuronal activity from non-invasive measurements

Hana Uhlirova; Kıvılcım Kılıç; Peifang Tian; Sava Sakadžić; Louis Gagnon; Martin Thunemann; Michèle Desjardins; Payam A. Saisan; Krystal Nizar; Mohammad A. Yaseen; Donald J. Hagler; Matthieu Vandenberghe; Srdjan Djurovic; Ole A. Andreassen; Gabriel A. Silva; Eliezer Masliah; David Kleinfeld; Sergei A. Vinogradov; Richard B. Buxton; Gaute T. Einevoll; David A. Boas; Anders M. Dale; Anna Devor

The computational properties of the human brain arise from an intricate interplay between billions of neurons connected in complex networks. However, our ability to study these networks in healthy human brain is limited by the necessity to use non-invasive technologies. This is in contrast to animal models where a rich, detailed view of cellular-level brain function with cell-type-specific molecular identity has become available due to recent advances in microscopic optical imaging and genetics. Thus, a central challenge facing neuroscience today is leveraging these mechanistic insights from animal studies to accurately draw physiological inferences from non-invasive signals in humans. On the essential path towards this goal is the development of a detailed ‘bottom-up’ forward model bridging neuronal activity at the level of cell-type-specific populations to non-invasive imaging signals. The general idea is that specific neuronal cell types have identifiable signatures in the way they drive changes in cerebral blood flow, cerebral metabolic rate of O2 (measurable with quantitative functional Magnetic Resonance Imaging), and electrical currents/potentials (measurable with magneto/electroencephalography). This forward model would then provide the ‘ground truth’ for the development of new tools for tackling the inverse problem—estimation of neuronal activity from multimodal non-invasive imaging data. This article is part of the themed issue ‘Interpreting BOLD: a dialogue between cognitive and cellular neuroscience’.


eLife | 2018

Capillary pericytes express α-smooth muscle actin, which requires prevention of filamentous-actin depolymerization for detection

Luis Alarcon-Martinez; Sinem Yilmaz-Ozcan; Muge Yemisci; Jesse Schallek; Kıvılcım Kılıç; Alp Can; Adriana Di Polo; Turgay Dalkara

Recent evidence suggests that capillary pericytes are contractile and play a crucial role in the regulation of microcirculation. However, failure to detect components of the contractile apparatus in capillary pericytes, most notably α-smooth muscle actin (α-SMA), has questioned these findings. Using strategies that allow rapid filamentous-actin (F-actin) fixation (i.e. snap freeze fixation with methanol at −20°C) or prevent F-actin depolymerization (i.e. with F-actin stabilizing agents), we demonstrate that pericytes on mouse retinal capillaries, including those in intermediate and deeper plexus, express α-SMA. Junctional pericytes were more frequently α-SMA-positive relative to pericytes on linear capillary segments. Intravitreal administration of short interfering RNA (α-SMA-siRNA) suppressed α-SMA expression preferentially in high order branch capillary pericytes, confirming the existence of a smaller pool of α-SMA in distal capillary pericytes that is quickly lost by depolymerization. We conclude that capillary pericytes do express α-SMA, which rapidly depolymerizes during tissue fixation thus evading detection by immunolabeling.


Current Pain and Headache Reports | 2013

How Does Fasting Trigger Migraine? A Hypothesis

Turgay Dalkara; Kıvılcım Kılıç

Fasting or skipping meals are well-characterized migraine triggers. However, mechanisms of the fasting-induced migraine headache are unclear. Here, we review the recent developments on brain glycogen metabolism and its modulation by sympathetic activity and propose that insufficient supply of glycogen-derived glucose at the onset of intense synaptic activity may lead to an imbalance between the excitatory and inhibitory terminals, causing collective depolarization of neurons and astrocytes in a network. This may activate perivascular trigeminal afferents by opening neuronal pannexin1 channels and initiating parenchymal inflammatory pathways. Depending on whether or not network depolarization spreads or remains local, fasting may trigger migraine headache with or without aura.


Annals of Neurology | 2018

Inadequate Brain Glycogen or Sleep Increases Spreading Depression Susceptibility

Kıvılcım Kılıç; Hulya Karatas; Buket Dönmez-Demir; Emine Eren-Koçak; Yasemin Gursoy-Ozdemir; Alp Can; Jean-Marie Petit; Pierre J. Magistretti; Turgay Dalkara

Glycogen in astrocyte processes contributes to maintenance of low extracellular glutamate and K+ concentrations around excitatory synapses. Sleep deprivation (SD), a common migraine trigger, induces transcriptional changes in astrocytes, reducing glycogen breakdown. We hypothesize that when glycogen utilization cannot match synaptic energy demand, extracellular K+ can rise to levels that activate neuronal pannexin‐1 channels and downstream inflammatory pathway, which might be one of the mechanisms initiating migraine headaches.


Journal of Cerebral Blood Flow and Metabolism | 2017

Spatio-temporal dynamics of cerebral capillary segments with stalling red blood cells

Şefik Evren Erdener; Jianbo Tang; Amir Y. Sajjadi; Kıvılcım Kılıç; Sreekanth Kura; Chris B. Schaffer; David A. Boas

Optical coherence tomography (OCT) allows label-free imaging of red blood cell (RBC) flux within capillaries with high spatio-temporal resolution. In this study, we utilized time-series OCT-angiography to demonstrate interruptions in capillary RBC flux in mouse brain in vivo. We noticed ∼7.5% of ∼200 capillaries had at least one stall in awake mice with chronic windows during a 9-min recording. At any instant, ∼0.45% of capillaries were stalled. Average stall duration was ∼15 s but could last over 1 min. Stalls were more frequent and longer lasting in acute window preparations. Further, isoflurane anesthesia in chronic preparations caused an increase in the number of stalls. In repeated imaging, the same segments had a tendency to stall again over a period of one month. In awake animals, functional stimulation decreased the observance of stalling events. Stalling segments were located distally, away from the first couple of arteriolar-side capillary branches and their average RBC and plasma velocities were lower than nonstalling capillaries within the same region. This first systematic analysis of capillary RBC stalls in the brain, enabled by rapid and continuous volumetric imaging of capillaries with OCT-angiography, will lead to future investigations of the potential role of stalling events in cerebral pathologies.


Nature Communications | 2018

Deep 2-photon imaging and artifact-free optogenetics through transparent graphene microelectrode arrays

Martin Thunemann; Yichen Lu; Xin Liu; Kıvılcım Kılıç; Michèle Desjardins; Matthieu Vandenberghe; Sanaz Sadegh; Payam A. Saisan; Qun Cheng; Kimberly L. Weldy; Hongming Lyu; Srdjan Djurovic; Ole A. Andreassen; Anders M. Dale; Anna Devor; Duygu Kuzum

Recent advances in optical technologies such as multi-photon microscopy and optogenetics have revolutionized our ability to record and manipulate neuronal activity. Combining optical techniques with electrical recordings is of critical importance to connect the large body of neuroscience knowledge obtained from animal models to human studies mainly relying on electrophysiological recordings of brain-scale activity. However, integration of optical modalities with electrical recordings is challenging due to generation of light-induced artifacts. Here we report a transparent graphene microelectrode technology that eliminates light-induced artifacts to enable crosstalk-free integration of 2-photon microscopy, optogenetic stimulation, and cortical recordings in the same in vivo experiment. We achieve fabrication of crack- and residue-free graphene electrode surfaces yielding high optical transmittance for 2-photon imaging down to ~ 1 mm below the cortical surface. Transparent graphene microelectrode technology offers a practical pathway to investigate neuronal activity over multiple spatial scales extending from single neurons to large neuronal populations.Optical imaging and manipulation technologies cannot be easily integrated with electrical recordings due to generation of light-induced artifacts. Here the authors report the optimization of transparent graphene microelectrode fabrication to achieve artifact-free electrical recordings along with deep 2-photon imaging in vivo.


bioRxiv | 2018

Homogenization of capillary flow and oxygenation in deeper cortical layers correlates with increased oxygen extraction

Baoqiang Li; Tatiana V. Esipova; Ikbal Sencan; Kıvılcım Kılıç; Buyin Fu; Michèle Desjardins; Mohammad Moeini; Sreekanth Kura; Mohammad A. Yaseen; Frédéric Lesage; Leif Østergaard; Anna Devor; David A. Boas; Sergei A. Vinogradov; Sava Sakadžić

Our understanding of how capillary blood flow and oxygen distribute across cortical layers to meet the local metabolic demand is incomplete. We addressed this question by using two-photon imaging of microvascular oxygen partial pressure (PO2) and flow in the whisker barrel cortex in awake mice at rest. Our measurements in layers I-V show that the capillary red-blood-cell flux and oxygenation heterogeneity, and the intracapillary resistance to oxygen delivery, all decrease with depth, reaching a minimum around layer IV, while the depth-dependent oxygen extraction fraction is increased in layer IV, where oxygen demand is presumably the highest. Our findings suggest that homogenization of physiological observables relevant to oxygen transport to tissue is an important part of the microvascular network adaptation to a local brain metabolism increase. These results will inform the biophysical models of layer-specific cerebral oxygen delivery and consumption and improve our understanding of diseases that affect the cerebral microcirculation. IMPACT STATEMENT Homogenization of cortical capillary blood flow and oxygenation underpins an important mechanism, by which the microvascular network adapts to an increase in the local brain oxidative metabolism.


Neural Imaging and Sensing 2018 | 2018

Cerebral oxygenation and blood flow distributions along the capillary path in awake mice (Conference Presentation)

Baoqiang Li; Tatiana V. Esipova; Kıvılcım Kılıç; Mohammad Moeini; Sergei A. Vinogradov; Anna Devor; David A. Boas; Sava Sakadžić; Ikbal Sencan; Mohammad A. Yaseen; Buyin Fu; Sreekanth Kura; Frédéric Lesage

Cortical capillary blood flow and oxygenation are highly heterogeneous. Mapping absolute capillary blood flow and oxygenation along capillary path is a key step towards understanding how oxygen is transported and delivered in a complex microvascular network to enable adequate tissue oxygenation. In this work, we applied two-photon microscopic imaging of intravascular oxygen partial pressure (PO2) to measure both oxygen concentration and red blood cell (RBC) flux in cortical arterioles, capillaries, and venules. Imaging was performed in awake, head-restrained C57BL/6 mice (n=15), through a chronic sealed cranial window centered over the E1 whisker barrel. We obtained a detailed mapping of the resting state cortical microvascular PO2 in all arterioles and venules, and both PO2 and RBC flux in most capillaries down to 600 μm depth from the cortical surface (n=6,544 capillaries across all mice). Capillary RBC speed and density were also extracted and all measurements were co-registered with the microvascular angiograms. We characterized the distributions of capillary PO2 and flow as a function of branching order and cortical depth. The results show strong positive correlation between oxygenation and flow in the capillary segments, with an increased correlation in downstream capillaries. We have also observed homogenization of both oxygenation and flow in deeper cortical layers, which may imply a mechanism to improve oxygen delivery without increasing global blood flow in the area with increased metabolism.


Journal of Visualized Experiments | 2018

Neurovascular Network Explorer 2.0: A Simple Tool for Exploring and Sharing a Database of Optogenetically-evoked Vasomotion in Mouse Cortex In Vivo

Hana Uhlirova; Peifang Tian; Kıvılcım Kılıç; Martin Thunemann; Vishnu B. Sridhar; Radim Chmelik; Hauke Bartsch; Anders M. Dale; Anna Devor; Payam A. Saisan

The importance of sharing experimental data in neuroscience grows with the amount and complexity of data acquired and various techniques used to obtain and process these data. However, the majority of experimental data, especially from individual studies of regular-sized laboratories never reach wider research community. A graphical user interface (GUI) engine called Neurovascular Network Explorer 2.0 (NNE 2.0) has been created as a tool for simple and low-cost sharing and exploring of vascular imaging data. NNE 2.0 interacts with a database containing optogenetically-evoked dilation/constriction time-courses of individual vessels measured in mice somatosensory cortex in vivo by 2-photon microscopy. NNE 2.0 enables selection and display of the time-courses based on different criteria (subject, branching order, cortical depth, vessel diameter, arteriolar tree) as well as simple mathematical manipulation (e.g. averaging, peak-normalization) and data export. It supports visualization of the vascular network in 3D and enables localization of the individual functional vessel diameter measurements within vascular trees. NNE 2.0, its source code, and the corresponding database are freely downloadable from UCSD Neurovascular Imaging Laboratory website1. The source code can be utilized by the users to explore the associated database or as a template for databasing and sharing their own experimental results provided the appropriate format.

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Anna Devor

University of California

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Anders M. Dale

University of California

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Michèle Desjardins

École Polytechnique de Montréal

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Hana Uhlirova

University of California

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