Thiago Lívio Pessoa Oliveira de Souza

Comparative analysis of nutritional compositions of transgenic RNAi-mediated virus-resistant bean (event EMB-PV051-1) with its non-transgenic counterpart

Golden mosaic is among the most economically important diseases that severely reduce bean production in Latin America. In 2011, a transgenic bean event named Embrapa 5.1 (EMB-PV051-1), resistant to bean golden mosaic virus, was approved for commercial release in Brazil. The aim of this study was to measure and evaluate the nutritional components of the beans, as well as the anti-nutrient levels in the primary transgenic line and its derived near-isogenic lines after crosses and backcrosses with two commercial cultivars. Nutritional assessment of transgenic crops used for human consumption is an important aspect of safety evaluations. Results demonstrated that the transgenic bean event, cultivated under field conditions, was substantially equivalent to that of the non-transgenic bean plants. In addition, the amounts of the nutritional components are within the range of values observed for several bean commercial varieties grown across a range of environments and seasons.

Identification of Races of Selected Isolates of Uromyces appendiculatus from Minas Gerais (Brazil) Based on the new international classification system

ABSTRACT Twelve single-pustule isolates of Uromyces appendiculatus, the etiological agent of common bean rust, were collected in the state of Minas Gerais, Brazil, and classified according to the new international differential series and the binary nomenclature system proposed during the 3 rd Bean Rust Workshop. These isolates have been used to select rust-resistant genotypes in a bean breeding program conducted by our group. The twelve isolates were classified into seven different physiological races: 21-3, 29-3, 53-3, 53-19, 61-3, 63-3 and 63-19. Races 61-3 and 63-3 were the most frequent in the area. They were represented by five and two isolates, respectively. The other races were represented by just one isolate. This is the first time the new international classification procedure has been used for U. appendiculatus physiological races in Brazil. The general adoption of this system will facilitate information exchange, allowing the cooperative use of the results obtained by different research groups throughout the world. The differential cultivars Mexico 309, Mexico 235 and PI 181996 showed resistance to all of the isolates that were characterized. It is suggested that these cultivars should be preferentially used as sources for resistance to rust in breeding programs targeting development lines adapted to the state of Minas Gerais.

Breeding for common bean (Phaseolus vulgaris L.) rust resistance in Brazil

Common bean is an economically, nutritionally, and socially important crop. It is grown in distinct regions and different seasons around the world by subsistence level farmers with low-technology input as well as by farmers that use high input technologies. One important factor that can limit the bean growing and drastically affect grain yields is the high number of destructive pathogens that attack and cause serious damage to the crop. Among them is bean rust, incited by the fungus Uromyces appendiculatus. This disease is distributed throughout the world, but it effectively causes major production problems in humid tropical and subtropical regions. In Brazil, rust causes major losses in south, southeast, and central regions of the country. Bean rust control by resistant cultivars is an easy and economical strategy to be used in association to other rust management practices. Pyramiding of different race-specific resistance genes in association with other genes conferring adult plant resistance, slow rusting, and reduced pustule size can prolong the lifespan of a common bean cultivar by creating a more durable resistance complex against the rust pathogen. This review manuscript presents an overview on bean rust and reports some breeding efforts aiming to develop rust resistant cultivars in Brazil.

DNA marker-assisted selection to pyramid rust resistance genes in “carioca” seeded common bean lines

This work reports a gene pyramiding approach assisted by DNA markers used to develop “carioca” seeded common bean (Phaseolus vulgaris L.) elite lines harboring three different rust resistance genes. Rust is among the most destructive diseases that attack P. vulgaris and cause serious damage worldwide. The rust resistance genes Ur-5 (from ‘Mexico 309’), Ur-11 (from ‘BelMiDak RR-3’), and Ur-14 (from ‘BRS Pioneiro’, a “carioca” seeded cultivar derived from the resistance source ‘Ouro Negro’) were combined in the “carioca” seeded bean cultivar ‘Rudá’. Firstly, two different backcross programs were conducted separately to produce progenies harboring individually the Ur-5 and Ur-11 genes. Molecular fingerprinting analysis was used to select plants genetically similar to ‘Rudá’ in the backcross cycles to accelerate the recurrent-background recovery. The obtained progenies were initially intercrossed and then crossed with ‘BRSMG Pioneiro’ (Ur-14). The final F1 plants derived from these crosses were screened with DNA markers linked to the three rust resistance genes: SI19 (Ur-5), SAE19 (Ur-11) and OPX11 (Ur-14). The plants selected as harboring all the alleles of interest were used to obtain the next generations. The selection based on DNA markers was conducted up to the F4:5 generation. We were able to select F4:7 progenies showing all the DNA markers associated to the genes of interest and resistant to all specific races of U. appendiculatus used for phenotypically detecting each one of the rust resistance genes. Yield evaluations show that these selected lines are as productive as the recurrent parent ‘Rudá’ and high-performing control cultivars grown in Brazil.

Genotype by environment interaction for disease resistance and other important agronomic traits supporting the indication of common bean cultivars

The present work aimed to study the genotype by environment interaction for nine important agronomic traits as a support for the indication of common bean cultivars for the Southern region of Brazil, identifying cultivars that possess high adaptability/stability. We carried out 25 field trials, in the rainy and dry sowing seasons, at different locals in the states of Paraná and Santa Catarina, from 2008 to 2010. The trials included 17 cultivars. Data were obtained for agronomic traits and subjected to variance analyses, and to adaptability and stability analyses according to the Nunes method. The genotype by environment interaction is important for different agronomic traits. There is genetic variation among cultivars and it was identified a different number of superior cultivars for each trait. Considering the means and adaptability and stability scores, 88% of the cultivars were superior for rust, 53% for anthracnose, 41% for grain yield, plant architecture and cycle, 30% for fusarium wilt and lodging, and 18% for angular leaf spot and common bacterial blight. For some of these traits, like angular leaf spot, common bacterial blight, fusarium wilt and lodging, it is necessary to intensify the efforts to provide more cultivars with high resistance or tolerance level, adaptability and stability. BRS Esplendor, a black-seeded cultivar, CNFC 10431 and BRS Sublime, both carioca-seeded cultivars, presented superiority for six of nine traits, being indicated to be used in the Southern region of Brazil. Other cultivars presented advantages for fewer traits and must be used in environments which these traits present greater importance.

Comparison of inoculation methods for selecting common bean genotypes with physiological resistance to white mold

A bstractAlthough different methods of inoculation have been proposed to assess the reaction of common bean to white mold (WM) caused by Sclerotinia sclerotiorum, a thorough comparison among them is lacking. In this study, six approaches were tested to identify the most reproducible and efficient method for discriminating six common bean genotypes of carioca market class based on their resistance to white mold. These included: modified straw test (ST), cotton pad (CP), infected flower on intact plant (IFIP) or on detached leaf (IFDL), and mycelium disc on intact plant (MDIP) or on detached leaf (MDDL). All experiments were conducted in a greenhouse or laboratory in a completely randomized design with four replicates. Several statistics including coefficient of variation (CV), standard deviation, intraclass correlation coefficient (ICC), p value for Bartlett’s test for homoscedasticity and sensitivity ratio (SR) were used as criteria for discrimination. The Spearman’s correlation coefficient was used to test the association between the methods. Results showed ST as the most suitable for selecting WM-resistant genotypes, followed by the IFIP method.

Genome-Wide Association and Regional Heritability Mapping of Plant Architecture, Lodging and Productivity in Phaseolus vulgaris

The availability of high-density molecular markers in common bean has allowed to explore the genetic basis of important complex agronomic traits with increased resolution. Genome-Wide Association Studies (GWAS) and Regional Heritability Mapping (RHM) are two analytical approaches for the detection of genetic variants. We carried out GWAS and RHM for plant architecture, lodging and productivity across two important growing environments in Brazil in a germplasm of 188 common bean varieties using DArTseq genotyping strategies. The coefficient of determination of G × E interaction (c2int) was equal to 17, 21 and 41%, respectively for the traits architecture, lodging, and productivity. Trait heritabilities were estimated at 0.81 (architecture), 0.79 (lodging) and 0.43 (productivity), and total genomic heritability accounted for large proportions (72% to ≈100%) of trait heritability. At the same probability threshold, three marker–trait associations were detected using GWAS, while RHM detected eight QTL encompassing 145 markers along five chromosomes. The proportion of genomic heritability explained by RHM was considerably higher (35.48 to 58.02) than that explained by GWAS (28.39 to 30.37). In general, RHM accounted for larger fractions of the additive genetic variance being captured by markers effects inside the defined regions. Nevertheless, a considerable proportion of the heritability is still missing (∼42% to ∼64%), probably due to LD between markers and genes and/or rare allele variants not sampled. RHM in autogamous species had the potential to identify larger-effect QTL combining allelic variants that could be effectively incorporated into whole-genome prediction models and tracked through breeding generations using marker-assisted selection.