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Dive into the research topics where Yide Zhang is active.

Publication


Featured researches published by Yide Zhang.


Journal of The Optical Society of America A-optics Image Science and Vision | 2016

Investigation of signal-to-noise ratio in frequency-domain multiphoton fluorescence lifetime imaging microscopy

Yide Zhang; Aamir A. Khan; Genevieve D. Vigil; Scott S. Howard

Multiphoton microscopy (MPM) combined with fluorescence lifetime imaging microscopy (FLIM) has enabled three-dimensional quantitative molecular microscopy in vivo. The signal-to-noise ratio (SNR), and thus the imaging rate of MPM-FLIM, which is fundamentally limited by the shot noise and fluorescence saturation, has not been quantitatively studied yet. In this paper, we investigate the SNR performance of the frequency-domain (FD) MPM-FLIM with two figures of merit: the photon economy in the limit of shot noise, and the normalized SNR in the limit of saturation. The theoretical results and Monte Carlo simulations find that two-photon FD-FLIM requires 50% fewer photons to achieve the same SNR as conventional one-photon FLIM. We also analytically show that the MPM-FD-FLIM can exploit the DC and higher harmonic components generated by nonlinear optical mixing of the excitation light to improve SNR, reducing the required number of photons by an additional 50%. Finally, the effect of fluorophore saturation on the experimental SNR performance is discussed.


Optics Express | 2016

Super-sensitivity multiphoton frequency-domain fluorescence lifetime imaging microscopy

Yide Zhang; Aamir A. Khan; Genevieve D. Vigil; Scott S. Howard

We present a series of experiments that demonstrate a super-sensitive chemical imaging technique based on multiphoton frequency-domain fluorescence lifetime imaging microscopy (MPM-FD-FLIM) that shows a 2× improvement in imaging speed compared to the theoretical limit of conventional MPM-FD-FLIM. Additionally, this technique produces unprecedented sensitivity over a large range of fluorescence lifetimes. These results are achieved through simple modifications to data analysis in a conventional MPM-FD-FLIM microscope and are based on an analytical model describing the signal-to-noise ratio (SNR) of a MPM-FD-FLIM system [J. Opt. Soc. Am. A33, B1 (2016)]. Here we experimentally validate this model.


Optics Letters | 2017

Saturation-compensated measurements for fluorescence lifetime imaging microscopy

Yide Zhang; Genevieve D. Vigil; Lina Cao; Aamir A. Khan; David Benirschke; Tahsin Ahmed; Patrick Fay; Scott S. Howard

Fluorophore saturation is the key factor limiting the speed and excitation range of fluorescence lifetime imaging microscopy (FLIM). For example, fluorophore saturation causes incorrect lifetime measurements when using conventional frequency-domain FLIM at high excitation powers. In this Letter, we present an analytical theoretical description of this error and present a method for compensating for this error in order to extract correct lifetime measurements in the limit of fluorophore saturation. We perform a series of simulations and experiments to validate our methods. The simulations and experiments show a 13.2× and a 2.6× increase in excitation range, respectively. The presented method is based on algorithms that can be easily applied to existing FLIM setups.


Optical Materials Express | 2017

Silica-coated ruthenium-complex nanoprobes for two-photon oxygen microscopy in biological media

Aamir A. Khan; Genevieve D. Vigil; Yide Zhang; Susan K. Fullerton-Shirey; Scott S. Howard

Multiphoton microscopy (MPM) allows for three-dimensional in vivo microscopy in scattering tissue with submicron resolution and high signal-to-noise ratio. MPM combined with fluorescence lifetime measurements further enables quantitative imaging of molecular concentrations, such as dissolved oxygen, with the same optical resolution as MPM, in vivo. However, biocompatible oxygen-sensitive MPM probes are not available commercially and are difficult to synthesize. Here we present a simple MPM oxygen imaging probe compatible with aqueous biological media based on a water-soluble ruthenium-complex nanomicelle. By adding a layer of silica shell to the nanomicelle assembly, oxygen sensitivity and probe stability in biological media increases dramatically. While uncoated probes are unusable in the presence of serum albumin, photophysical characterization shows that the silica coating enables quantitative oxygen measurements in biological media and increases probe stability by more than an order of magnitude.


Journal of The Optical Society of America A-optics Image Science and Vision | 2017

Description of deep saturated excitation multiphoton microscopy for super-resolution imaging

Genevieve D. Vigil; Yide Zhang; Aamir A. Khan; Scott S. Howard

Here we recount the standard two-level model that describes saturated excitation (SAX) in multiphoton microscopy (MPM), a new technique for super-resolution fluorescence microscopy in scattering tissue, which requires no special chemistry and only simple modifications to a commercial MPM microscope. We use the model to study conditions required for improvements in MPM SAX resolution and experimental implementation strategies. Simulation results find zeros, or nodes, in the frequency response, which generate highly irregular point-spread functions (PSFs), such as rings and ripples, that contain spatial frequency content >3× larger than allowed by diffraction. These PSFs are a direct result of zeros in the frequency response of saturated fluorophores under specific excitation conditions. The impact on image quality is discussed using simulations of targets imaged with SAX PSFs. Further, we explore engineering sets of irregular PSFs by varying the excitation power and reconstructing super-resolution images from the set of captured images.


Cancer | 2016

Theoretical Analysis of the Signal-to-Noise Ratio of Two-Photon Oxygen Imaging Probes

Aamir A. Khan; Genevieve D. Vigil; Yide Zhang; Scott S. Howard

SNR performance of optical chemical sensors is described in the presence of phosphorescence saturation by using Poisson statistics and Stern-Volmer kinetics. The described framework can be applied across wide ranges of sensitivites and lifetimes.


Biomedical Optics Express | 2018

Super-resolution fluorescence microscopy by stepwise optical saturation

Yide Zhang; Prakash D. Nallathamby; Genevieve D. Vigil; Aamir A. Khan; Devon E. Mason; Joel D. Boerckel; Ryan K. Roeder; Scott S. Howard


Biophotonics Congress: Biomedical Optics Congress 2018 (Microscopy/Translational/Brain/OTS) (2018), paper JTh3A.27 | 2018

Stepwise Optical Saturation Microscopy: Obtaining Super-Resolution Images with Conventional Fluorescence Microscopes

Yide Zhang; David Benirschke; Scott S. Howard


Biomedical Optics Express | 2018

Generalized stepwise optical saturation enables super-resolution fluorescence lifetime imaging microscopy

Yide Zhang; David Benirschke; Ola Abdalsalam; Scott S. Howard


conference on lasers and electro optics | 2017

Simulation and experimental design of saturated excitation (SAX) multiphoton microscopy (MPM)

Genevieve D. Vigil; Yide Zhang; Aamir A. Khan; Scott S. Howard

Collaboration


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Aamir A. Khan

University of Notre Dame

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Devon E. Mason

University of Notre Dame

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Lina Cao

University of Notre Dame

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Patrick Fay

University of Notre Dame

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Ryan K. Roeder

University of Notre Dame

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Tahsin Ahmed

University of Notre Dame

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